result

Gene information

Detail information of AfisC6G03420

Location

Gene	Chr	Start	End	Strand
AfisC6G03420	chr6	620884095	620887312	+

Sequences

CDS

>AfisC6G03420
ATGAATTCTACAACATCAGAAAAATCATCATCTCGGCCTCAAGAAAACAAGGATGGCTCTTCCGAAAACATGGCGGCTAGTGCACGATCTAGTCGAAGCTCGAATTCCGATTATCACGAAACTAATAAAGTAGCATCATCAAAATCATCTTTTGAAAACGCAAAAGATAACAGTGCCAACAGCAATAACATAACGAATCGTCGTCGAAGCCTGGAAACAAAACCAGCCTCAATGGAACATTCCACAAAGTCAAGCGACACCGAAGAAAGAAACTCGCATTCACCGTCAAGAACTCAAGAGACTGTATCAGAGAAGACTTCATCAGAGAATGAAAAATCAGAGGCTAAAGAAAACCATAACGCGCACCTGATCCCTAAACATCCTCCTCAATGTTCAGAAGCATCAACAAAGAAAAACGCTGTAAATAACAATGGAAAGAATCAGCCACCAGCAATACCAGGCTCAAAGCTGAGCGATGCAAAAACAAGCAATTCCAAAAACTCTACAGGCCAAGGAAGCAACAATGGCAGAAGCGACAGCATAGATAGCAATTCAACAGGGACTATAAAGAGGCATACGGGAGGCGACTGTAGATGGGAGGCGGTTCAGTTGGCAAATACCAGAGATGCCCCTCTAGGGCTGAGTCATTTCAGGCTGCTGAAGAGGTTGGGGTATGGGGATATTGGAAGTGTGTATTTGGTGGAGCTTAGGGGCACTGGGGCGTACTTTGCAATGAAGGTGATGGATAGAGCGTCCCTTGTGAGTAGGAATAAGCTGCTTAGGGCGCAGACCGAGAGGGAGATTCTGGGCTTGCTGGATCATCCCTTTTTGCCGACTTTGTATTGCTACTTTGAGACGGAGAAGTTCTACTGCCTTGTGATGGAGTATTGTAGTGGGGGGAATCTGCATTCGCTTAGGCAGAAGCAGCCTAGCAAGTATTTCACTGAACAAGCTGCCAGATTCTATGCTTCGGAGGTTCTCCTAGCACTAGAATACCTCCACATGTTAGGCGTAATATACCGCGACCTGAAACCCGAAAACGTCCTTGTAAGAGAAGAAGGCCACATAATGCTGTCTGATTTCGACCTCTCGCTGCGCTGCTCCGTCAGCCCAACCCTAGTAAACTCGCAATCAACCAACTCACTCATCCTCGAAGGCGATCAAGCCGTCCAAAGCTGCATCCAACCATCCTCCTTCTTCCCCCGCATCCTCCCCAAACGCAGCCGAAAGTCCAAATCCGACTTCGGAGTAGGAAGCAGCTCTCTCCCAGAACTCTTAGCAGAGCCCACAACAGTCAGATCAATGTCCTTTGTAGGCACCCATGAATACCTAGCTCCTGAAATAATAAAAGGAGAAGGTCATGGCAGTGCAGTAGACTGGTGGACTTTTGGGATATTTCTGTATGAGCTTCTGCATGGGACGACCCCTTTTAAAGGATCGGGTAATAAAGCTACCCTGCATAATGTTGTAGGGCAGCCCTTGAGGTTTCCAGAAATGCCAAATGTCAGTAATAATGCAAGAGATTTAATAAGGGGTCTATTGGTGAAGGATCCTCAGAAAAGGATTGCGTATAGAAGAGGTGCAACCGAGATTAAGCAGCATCCGTTCTTTGAAGGGGTGAACTGGGCTTTGGTAAGAAGTGCTTCACCTCCACATGTTCCGGAACCTGTGGATTTTTCGCAGTTTGCTGTGAAGGAGAAGAAGCAAGATAATGATGTTACTGGGGGTAATAAAGCTGTTTCTACCGACTCTGTTGCTGGAGGTGGTAAAGGTGTTTCTACTGACTCTTCACATCTTGATTTTGAGTATTTTTAG

Protein

Gene

>AfisC6G03420
GAACAAGATTGATTAATCAAACTATCAATTGGCCATCCTTTGCAATTTACTCTTAATCTATGGTACGTATATCCACCAGTTATTATACTTCATTGCCAGCAAATATCTAGTACATATCTTAGTTCTCTGATTTTTAACAAAGCCTGCCCATAGATGATACCAACCAATTAAGAAAGATACATTGCAAAACCTTCTGTAACACCTACATTTTCAGCAATGAATTCTACAACATCAGAAAAATCATCATCTCGGCCTCAAGAAAACAAGGATGGCTCTTCCGAAAACATGGCGGCTAGTGCACGATCTAGTCGAAGCTCGAATTCCGATTATCACGAAACTAATAAAGTAGCATCATCAAAATCATCTTTTGAAAACGCAAAAGATAACAGTGCCAACAGCAATAACATAACGAATCGTCGTCGAAGCCTGGAAACAAAACCAGCCTCAATGGAACATTCCACAAAGTCAAGCGACACCGAAGAAAGAAACTCGCATTCACCGTCAAGAACTCAAGGTATTGTTGCCGACATTAACTCATCTTACGGAAAATACATCATATCATACATTGAGTTTCTAATGCACATAAAATGTCAGAGACTGTATCAGAGAAGACTTCATCAGAGAATGAAAAATCAGAGGCTAAAGAAAACCATAACGCGCACCTGATCCCTAAACATCCTCCTCAATGTTCAGAAGCATCAACAAAGAAAAACGCTGTAAATAACAATGGAAAGAATCAGCCACCAGCAATACCAGGCTCAAAGCTGAGCGATGCAAAAACAAGCAATTCCAAAAACTCTACAGGCCAAGGAAGCAACAATGGCAGAAGCGACAGCATAGATAGCAATTCAACAGGGACTATAAAGAGGCATACGGGAGGCGACTGTAGATGGGAGGCGGTTCAGTTGGCAAATACCAGAGATGCCCCTCTAGGGCTGAGTCATTTCAGGCTGCTGAAGAGGTTGGGGTATGGGGATATTGGAAGTGTGTATTTGGTGGAGCTTAGGGGCACTGGGGCGTACTTTGCAATGAAGGTGATGGATAGAGCGTCCCTTGTGAGTAGGAATAAGCTGCTTAGGGCGCAGACCGAGAGGGAGATTCTGGGCTTGCTGGATCATCCCTTTTTGCCGACTTTGTATTGCTACTTTGAGACGGAGAAGTTCTACTGCCTTGTGATGGAGTATTGTAGTGGGGGGAATCTGCATTCGCTTAGGCAGAAGCAGCCTAGCAAGTATTTCACTGAACAAGCTGCCAGGTAATTGTGCCATGACAAAAATTAATCTTTTAATAGGAAAAATCTTTGAGTCTCTGTGTACATGTGATTAAACAAATGAGCTATATGAATCTGTACCATTGGTACAGATTTTTAACTGTACCTCTGGAGCAAACTATGAACACCTAAACAAATTATATATTGATTATCATACATGATGAAAAGTACGGTAAAAAGAAAAGAAGAAAATTGTACAAGGGACATGATTAACCAGGGAAAGAACTTAAAAATAACTATTAATAAGGAAATAAGAAAATGTAAGTTCAATTATATTATATGCACATATATTATATATTGATCAAAATAATCTTGAATAGTTCTCTTTATACTAAAGAATAAACAAAAGAAATTCTAAAAATCAGATTAAATCTAAAGAAAAATTGAAAATTTGAAGTTTTAAAAATATAGTGTTTCATAAATATTTATTTTGAATAGTTCAAAAATTCCTAAACTTTCAGCTTCTAACAGTTTGGATTTTTTTTTTTATGAAATAAATAAAAGGACTTCAGTTTATAGATTTTTTTTTTAAAAAAAAAAGAGTAAAAGACGAATTTAACTTATTTTATTTTGATTTTCCTTTAGCAATTTGAGTTTTCACCTACAACATTATTTTAATGATGTCCCTTGTCTAATTTTTGTACCCTTTATCAATTATCCACATAAATTGTTAAAAAATCCCATATCTATACTAGTGCAATTAGAAATTCGTACCTCATTGGTATAAATACATATTCCTTTTTCTGTATAGAAATATCTACAAGTATGGTATTGAGTTTTTACAAATTATGGATTTTTTTTGAACAAATTACATATTGTTCGTCATCATCCATATCTTATTCTCAACTAACAGCCGGATGAATTATCATTTTCATCATTCAAACCAACAATTCAGCTGCATTTTAACCGTACAGCTGATACATATTGTTTATAATAAATAAATTCTTAAAGAAGTCCATGATTTATACCAGCAGTAAAGATTCAAACTCCTTTTCTGGAAACCATTTTTTTTTTTATAAATTAAATGAAACAAATTATGAAAGACAAGAAAATGATGTATAAATCTCACCTTGACTGTTGAATATTGACCAGATTCTATGCTTCGGAGGTTCTCCTAGCACTAGAATACCTCCACATGTTAGGCGTAATATACCGCGACCTGAAACCCGAAAACGTCCTTGTAAGAGAAGAAGGCCACATAATGCTGTCTGATTTCGACCTCTCGCTGCGCTGCTCCGTCAGCCCAACCCTAGTAAACTCGCAATCAACCAACTCACTCATCCTCGAAGGCGATCAAGCCGTCCAAAGCTGCATCCAACCATCCTCCTTCTTCCCCCGCATCCTCCCCAAACGCAGCCGAAAGTCCAAATCCGACTTCGGAGTAGGAAGCAGCTCTCTCCCAGAACTCTTAGCAGAGCCCACAACAGTCAGATCAATGTCCTTTGTAGGCACCCATGAATACCTAGCTCCTGAAATAATAAAAGGAGAAGGTCATGGCAGTGCAGTAGACTGGTGGACTTTTGGGATATTTCTGTATGAGCTTCTGCATGGGACGACCCCTTTTAAAGGATCGGGTAATAAAGCTACCCTGCATAATGTTGTAGGGCAGCCCTTGAGGTTTCCAGAAATGCCAAATGTCAGTAATAATGCAAGAGATTTAATAAGGGGTCTATTGGTGAAGGATCCTCAGAAAAGGATTGCGTATAGAAGAGGTGCAACCGAGATTAAGCAGCATCCGTTCTTTGAAGGGGTGAACTGGGCTTTGGTAAGAAGTGCTTCACCTCCACATGTTCCGGAACCTGTGGATTTTTCGCAGTTTGCTGTGAAGGAGAAGAAGCAAGATAATGATGTTACTGGGGGTAATAAAGCTGTTTCTACCGACTCTGTTGCTGGAGGTGGTAAAGGTGTTTCTACTGACTCTTCACATCTTGATTTTGAGTATTTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246619.1	9.3e-202	serine/threonine-protein kinase RHS3-like
Swissprot	Q9LTW5.1	1.1e-175	AGC serine/threonine-protein kinase subfamily 1 member 5
trEMBL	A0A5P1FTM1	6.7e-202	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G12690.1	68.37	0.0	652	AGC1.5	AGC kinase 1.5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC6G03420	AT3G12690.3	449	137	3	161	604	129	577	68.37	652
AfisC6G03420	AT3G12690.2	449	137	3	161	604	129	577	68.37	652
AfisC6G03420	AT3G12690.1	449	137	3	161	604	129	577	68.37	652

Ortholog group

Species	Genes
Allium cepa	g154336.t1
Allium fistulosum	AfisC6G03420
Allium sativum	Asa8G00114.1; Asa8G03557.1
Arabidopsis thaliana	AT1G16440.1; AT1G79250.1; AT1G79250.2; AT3G12690.1; AT3G12690.2; AT3G12690.3
Oryza sativa	LOC_Os01g13270.1; LOC_Os01g13270.2; LOC_Os02g18430.1; LOC_Os05g14750.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	218	372	127.6	4.9e-37
PF00069.22	Pkinase	Domain	426	537	82.2	3.5e-23

Gene Ontology

Accession	Ontology	Name
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005524	F	ATP binding
GO:0005525	F	GTP binding
GO:0005730	C	nucleolus
GO:0006468	P	protein phosphorylation
GO:0008728	F	GTP diphosphokinase activity
GO:0008893	F	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity
GO:0009507	C	chloroplast
GO:0009734	P	auxin-activated signaling pathway
GO:0009860	P	pollen tube growth
GO:0009882	F	blue light photoreceptor activity
GO:0009908	P	flower development
GO:0009925	C	basal plasma membrane
GO:0009958	P	positive gravitropism
GO:0009986	C	cell surface
GO:0010150	P	leaf senescence
GO:0010540	P	basipetal auxin transport
GO:0015970	P	guanosine tetraphosphate biosynthetic process
GO:0015979	P	photosynthesis
GO:0019901	F	protein kinase binding
GO:0040008	P	regulation of growth
GO:0042594	P	response to starvation
GO:0048766	P	root hair initiation
GO:0048767	P	root hair elongation
GO:0048825	P	cotyledon development
GO:0080167	P	response to karrikin
GO:1901981	F	phosphatidylinositol phosphate binding
GO:2000114	P	regulation of establishment of cell polarity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08286	E2.7.11.-; protein-serine/threonine kinase	EC:2.7.11.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network