result

Gene information

Detail information of AfisC6G03435

Location

Gene	Chr	Start	End	Strand
AfisC6G03435	chr6	623825934	623829006	-

Sequences

CDS

Protein

Gene

>AfisC6G03435
ATTCCTTTCCTCTCCTACCAAAAAAGTTATCAAATCACATAAAATAAACGAAAAATAATCGGACTTTGTGTATATCAAAAATAAAACAGTAATTAAAAGAAAGAAAGAATCATGAGAGAGGAAGAAGAAGGAGATGAGCGGAATTGGTTCTCCCGGTGGGAGGAGGAGCTGCCATCGCCAGAGGAACTAATGCCCTTGTCCCAAACACTAATCACACCAAATCTAGCATTAGCCTTCGATATTCCCACCCCCAATAACCCTAACTCCACCCCCAACAACCCCAACCCTCTCTTCACCAGCAGCAGCCTGCCCAATCACCCCACCGTCACCACCACCGATTTCGATTCCGGAGATCTCAACAGCAGCGGCGGCAACAACAGCGGCACCAACAACGGCGACGAACCCGCTCGAACCCTAAAACGTCCCAGGCTCGTCTGGACCCCGCAGCTGCACAAGCGATTCGTCGATGCGGTCGCTCATCTGGGGATCAAGAACGCCGTTCCGAAAACGATAATGCAGTTGATGAGCGTTGACGGATTGACTCGCGAGAACGTGGCCAGTCACCTTCAGAAGTACAGACTGTACCTGAAGCGCATGCAGGGTTTGAATTCCGGAAGCGGGATCGGGGTTTCTGCTGGCGATTCTGCTACAGATCAATTGTTTGCCAGTGGCCCTTTACCGCACCATTTTCTAAGAGGAGGCGGAGGAGGTGGAGGCGGCGGCGGCGGTGAGGGGTCTTATGGTCAATTTGTGGCGCCAATGGTTGCTCTTCATCAGCAGCAACAGCAAATGGCTCATGCTGCCGCCGCAGCTGCTGCAGCAGCAGCACAGCAGCAGTTCTTTCAATCAAGGAGTATGGGGCAGTTTGTTGGCAATGGAGGTGCTAGCAATGGTGGATTTGATCATGGTTTTCTGAACAGAGGAGGGCAGAGAGTAGTGCCAGGTTTTCAGCAGAGGATGGGACCTGCAACTTATGTGGACGATTTGGAGGAGAGGAGCGGAGATGGAGGTGGAGGGAGGAGGGTGCTGACTCTTTTTCCTACTGGTGAAGATTGAGGTAATTGCTATGGATTGCATGCTATGATATATTCAAATGTTGTGTAGTAGTTTTAAATAATTGGAGTCTTAGATGCATTGATCTTAAGTTGCTTGATTAGCTATTATGATGAGGATGTAAATGGATTTATTTGGATTTAGGAAGAATGTTCGAGTTGGAGAGGATGATGATGATATTGGTAATCCAATAAGAGGGTTGGGACTTGGGAGTATGAGGAATAAGTACATGAAAGTATTGATAAATGATAACAACTTATAGCCATGACATTCAAGTTGGGCTCATTACTTTCATACCTTTGTTTTCCCATTTTAATTTAGTTTATCCTACTGTCATTGCATTGTGAAGTTTCTATCTAGTCATGTTTTCTTGACATGGTAGATAAACTAATGTCATGTAATGAAGAATTTGAAGGAGCTGACGTTGTTGGACAATTAATGTATGAATCTGAAATATTTGAGATATACTATTTGAATAATTCTTGAGTCTTAGGTTGATGCATATTCTATCTTTAATTATAAATCAATGTTTGTTGTTCATATTTTTTCTGAAATCTGATGCACAATGTATCTTTTCCTAAACTGCTTTTTCTTTTCATTTTGTTCATAACTGATACATAATGTAAATATAAATGATGTTTGAATGTCAGTTCTTTTCCCACTTACCTAATACCTGATCACTTGTGCATGTTTACCTATTTTGATATCTGAATATTGAGTTTGCTGTCTAACCGTCAGATTTAACATCATAAAAACAAATTTATTGCGGATTGTTATGCCATTCTTTATTTCAAGGATATGATGCTTATTGTTTATTGATTTTGAATTCTTGGCTTATAGTCCAAGTGGTTCTCTTTTCCAATGGTAGTTTAACTTTATGACAATGCTTTGTTACTGTTTTTGTCGTTCCTTTTTGTTAAGTCTAGGAAACCAAGTTTCACTCTTAGAACATCTCTGGCAGGATGATGGGTTTTAGGGTGAGGAGACTGAAAAAGGAAAAAAAAAAGGCGTTGATTCCTACCACTATTCCAACAGCGAGTAGGGGGAAATAAGTTTTTTTTTAAAAATAAATAAATAATCGTATAAATGGTTTTTAGAAAATCTTTTATACATTTTATATTTATTTTGGTTAACAAAATGTTGTTTGAGGTGTTAAATGAGCTTTAAAAAAACCATTTACGCTAAAGGTTTTCTGACTGAATATCGTTTAGGGTGTCCATGCTAAAAAAAAGGAAGAAACTCCCTCTTTCTTTCCTTTTCCATGCTCAAATGCACATTGTTGGAGCGTGAGGAGGGTTGAATAAATGCGAATTTTCACCGTTTTTCCATCTCTAGCTCCGGCTGGAGATGCTCTTAAACCAACCTTAAGAAGTCTATGAATTAACCATGTGTACAACGATACCAGACAACAATAAAAAATTAGGAGCTTTTTATTGGAAAATAACATTTGATGCAGTTATCCAGCTCTCATTACTTTCCATTTGATAAGATGAACATTTGTGTGTAATGGAGCATAGTTATAAATGTTCCTAGAAATGCCTTAATTGATCAAGTATGGTATGAGACAAAGAAGGATTGCGTTGAAAATGAGTGAGAGCAACTAGGAAATAAGAGTTTGGTATCAAATGATATAATATGATAAAACTAACGATTATTCAAGACTCCACTATTTAAATAAATTTCAGCTAATTCATTAGTTGTTGCTTTGAAGAACAGATTCTCCCTACATCAGCTAGCAGCCTAGCACTATTCATTCTAGTATTAATGCCGAGCAATCTTTCTTTGAAGAAGAAGAATATTATTTGAAAAGGAGCTCAATTAACAAAGCAATAATGGTTTGTCCTTGTACATTTACCTTTTCGTGAAATCTGCTTTGAAACCTGCAGTGCAGTAACTATGAATTGTCAGGAATGATTGGATCTATGATTGCTTTTAACATAGTTTCTGATTATTTTTATACCTGTTTCTTGTTTTTGTATGACTATTACTTTCTTAAAAGGATGGGAATAATTTTATTGAA

Functional annotation

Database	accession number	e-value	annotation
nr	RWW66074.1	4.2e-65	hypothetical protein BHE74_00026593
Swissprot	O22210.1	7.6e-51	Transcription factor MYBC1
trEMBL	A0A8D7B5G2	8.9e-65	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G10760.1	49.58	3e-59	225		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03435	AT3G10760.1	357	115	14	1	314	1	335	49.58	3e-59	225
AfisC6G03435	AT5G05090.1	321	111	10	1	314	1	266	46.11	4e-52	201
AfisC6G03435	AT2G40970.1	205	58	6	1	194	1	197	62.44	2e-49	193

Ortholog group

Species	Genes
Allium cepa	g2241.t1; g530148.t1
Allium fistulosum	AfisC6G03435
Allium sativum	Asa8G00310.1; Asa8G03538.1
Arabidopsis thaliana	AT2G40970.1; AT3G10760.1; AT5G05090.1
Oryza sativa	LOC_Os05g34110.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	107	156	31.6	1.2e-07

Gene Ontology

Accession	Ontology	Name
GO:0000156	F	phosphorelay response regulator activity
GO:0000160	P	phosphorelay signal transduction system
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0007623	P	circadian rhythm
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0010082	P	regulation of root meristem growth
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031537	P	regulation of anthocyanin metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048367	P	shoot system development
GO:0080022	P	primary root development
GO:0080036	P	regulation of cytokinin-activated signaling pathway
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network