result

Gene information

Detail information of AfisC6G03452

Location

Gene	Chr	Start	End	Strand
AfisC6G03452	chr6	626368768	626371730	-

Sequences

CDS

Protein

Gene

>AfisC6G03452
GAGGCTTCCCCAAAGATGGGCATTTATTATTGGGGTTACTTTAAATCGCTTCTTTCCCAAAGGCACTTTTGCTCCAAGCTTAATCCACTAACCATGAAATGCGATGTGCTGTTTTTCTAACAGTAAGTTCTATTATGAGTCATCAGATAATGTTACCGAGTAGTCTGAGATTCTCTCTATCTTGTTTTAGTCAAAGTAGTTATCTAAGATTCCTTGAACTTGTTTTCTTTAAACGCTCTTGTCCTATTGTCATATTTGTTTGCTTTTGTTGTATCTGCCTGCTTCCATCTCTTTTAGCTCAAAGATCAAGTTTATTTTGAGGATATTGAGCTCCCAAGTCAAAATAAACCACTAGTTATTTGTTGGGTTCTACGATTTGCTTCTATTGCAAAGAAATCAGTTTCATTTTTCTGTCATATCCAGGTTTGGAATCATAAAGCTTGAAGAAGCCCTCACCTAATTAGTTTTATTCAATACTTGTAAATGGGAACTCAAACAATGGGAAACAGTAGAGAAAGCATAAGCAGGCAAGGGTCGGTGTACAGCCTCACACTAAATGAAGTTGAGAACCATTTGGGAGCACCATTACATAGCATGAACCTTAACGATCTTTTAAGAAACGTGGTGCTGGATATCAATACTTCAACAACGAGATACGATCTTAACCAGCAAGGAAACATTGGAATGAATCGGGCATTGAGCAAGAAGACGGTTGATGAAGTATGGAAAGTTATACAGCAAGAGAAGAGCTTCCAAGGAAGAAGTATGAATGGAACGCTTGGAGAAATGACTTTGGAAGATTTTCTAGCTAATGCTGCAATGGTGACTGAGGATGACAATGGTAGTAGATTCGATAAAAATGGCAATTTTGGCTTTGCAGAACAACAACCAGTACCAGCAGCAGCAGCGAATTGGATGATGCAAACAGGAGCAGTTATGAGTACAAATCAGGGTAGGAAAAGAGGAATAAGGAAGGTTGATGAGGATAAGACCGTTGAAAGGAGGCAGAAGAGGATGATCAAGAATCGTGAGTCTGCTGCTCGATCACGAGCTAGGAAGCAGGTCAGGTCGTTTATGCCTTTTTTTTTTTAATTCCTTAAACTTGACTATGTACACAATTTTCAAAGTACTTGATTATATGCTAAGACAGTCATATTTTTGTTAGGGTTCATCCTTTCGAGTTTTTGATTTAATGCCTCTAAAGGATGTCACGAGTGAGAGCATCAAATTGAAAAGAGAAATATGCATGATTTGAACTATGATAGCGGCATTATCAATTGAAAAAAATTCAACATGTAGGGTTACACGTGTAGAATATGTGTGCGTTTCTTTCTTTCTTTTTATTTCTTTTTCTTTTTTTTGTTATGATTTTTTGGTTGTGAACATTATAAAATGTGATCAAATAAATGAATAAACACGTGAAACTGTTTCTGAAAGAATGAATAGAAATCAAAGTAATTTTCTCAATGATCATTTTAGAAGTATTTGAGTCTAAGTTAGGAGCATATAATAAATCTCTTAGGGTTTATTTCTTGAGCTTTTTTTGGTTATTGATTGACTATGTTAACAGCTTGTATGGCCATAAATTCATGATGAAGCCTTACCATAACTTGTTGATTTGATGGATTGTGTTTAAGGTATACTAAAGTTTAGTCTAAGTCCAAAATCAATCATGGAACATAATGGTATAGGTAGCCTCTCATGGTGTTGAGGATATGAAATTTTATTTGCAAACACATAGCGAGCTGATAAATGTGTCTTTTTGGCCAACAGGCATACACAAATGAGCTAGAGAACAAGGTTTCACAACTAGAAGAAGAGATTGAGATGCTTAGGAAGCAGAAGGTAAGGTTTCTCTCAAATTCCAGGCTTTTTTTTCTAACTTCATTCATCTAATAAGCTATTCTGGATAGGATTAGAATCAATATAATATTCTACTCCTTTTACAGTTCACAGCATGTGTGGTTACTTTGCACCAAGTGGTGCATTGTACTTACATAACTCCCTTGAAAGCTGTGGTACAATGTTGTCTTTGTTTAATACCTTGTTTACAGCCAAATCTGTTATATATTCAAGTACAATAAATTATTAATAGGATTTTATCGTAAAATTTGCTGTAATATCATTGCAACTTGCTATGATTCCATTACATGTTTATTATATACACATTCACTCCTGTGTTTGTTTTGGTTATCACAATACATTTGAAATCGAGCTCGTAACAGGATGTTGATTTACTAATTCATGCATTAAAACTTTTTCAGTGAATTTGACATACTTTGTACGTTGAACCAAAGTGTACACGTAAGTCTAAAAAATCGAAACAAATAAAAAGCTACAGTTGTACATTTTCAGGAATTTAAACTGACCACTTCACTTGTGATTCCTTTTGCTTCCACTTATCTTTTTCAAAACTTTCCACCATCTTTTCATTTCCATATACGTGTTTAGACATTTTTAGTCTGTGCATTGCATTTTTATTTGCTTTTCACAGATCTATCTTATAAAATTGTTTATTTCAAAGCATACTCATAATCATAATTAAACTGTTTATTTATTTATTTTAGTTAAAGCACATATGATACAGGCAAATACTTTGAATTAACCAAACCGTTGATTCATGAATATGAGTATGCTAGCTCTCAACAAATATAATAAACTTCATGTTCTACGATACTTTTTTCATTTTGCATATTACAGGAATTGGATTCACTGCTATTTTCAGCTGCACCACCTCAAGATCAAAAGTATCATCTTCGCAGATCAATCTCTGCTTCTTTCTGAAAGTGTGTCTGTAAAATATCATGTTTATAAGATTATCATGAAGCAACGGTTTATTATGATCTTGACTAAAGGATATAAGAAGTGTTTCTATTGTACGAACTAGTAAGATTCATCTACTTACCATGTGGGCTTGAACAATCTGTAAATGTATTTAGATATATATTAAAGTTCCCAGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249910.1	1.7e-39	LOW QUALITY PROTEIN: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9C5Q2.1	5.1e-36	bZIP transcription factor 12
trEMBL	A0A8D7FE45	8.1e-39	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41070.1	48.91	2e-42	169	ATBZIP12;DPBF4;EEL	Basic-leucine zipper (bZIP) transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03452	AT2G41070.2	229	89	7	11	217	14	236	48.91	2e-42	169
AfisC6G03452	AT2G41070.3	229	89	7	11	217	14	236	48.91	2e-42	169
AfisC6G03452	AT2G41070.1	229	89	7	11	217	14	236	48.91	2e-42	169

Ortholog group

Species	Genes
Allium cepa	g42263.t1; g478847.t1
Allium fistulosum	AfisC6G03452
Allium sativum	Asa7G01598.1; Asa8G03528.1
Arabidopsis thaliana	AT2G41070.1; AT2G41070.2; AT2G41070.3; AT3G56850.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00170.18	bZIP_1	Family	173	216	49.8	2.5e-13

Gene Ontology

Accession	Ontology	Name
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009739	P	response to gibberellin
GO:0009911	P	positive regulation of flower development
GO:0010152	P	pollen maturation
GO:0010187	P	negative regulation of seed germination
GO:0010200	P	response to chitin
GO:0010255	P	glucose mediated signaling pathway
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043621	F	protein self-association
GO:0048316	P	seed development
GO:1900057	P	positive regulation of leaf senescence
GO:1903648	P	positive regulation of chlorophyll catabolic process
GO:2000028	P	regulation of photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14432	ABF; ABA responsive element binding factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network