result

Gene information

Detail information of AfisC6G03459

Location

Gene	Chr	Start	End	Strand
AfisC6G03459	chr6	628151777	628154382	+

Sequences

CDS

Protein

Gene

>AfisC6G03459
ATGGCAACCTCTTCGTCTGCTACTTCTACTACATCATCTTCATCTTCTTCCCTTTCTCCTTCCAATCATACAAGCAACCCTTCGTCGGCGCCTAAGAAGACAAGAGCTAAGAGAAAAAGACAAGATAGTAGTGGACATGATCAATCTACCATCCCTCAATCTAAGAGGAGTTCCATCTATAGGGGTGTCACCAAGTAATATTTATGTTTTCTTCCTTATCTTTTTCTTTATTCACACACCTTACAGTATGTATGTATCAAAATACAAATAGAGTTTGGTATGATTCTGATGCAGTAGAAATCTCTAGCTTTGCTAACATAACAGTAATTCTTTTGAAGCTTTTAGATTGCTTTTAAACATTTGTATGACTAACTTATGTAAGTCAAAAGAATCATGCTAGTTATGACGTATATTTTGCAACTTTCTCATGTTAGATTTTGTCACCCACTATATAGTGGGTTTCTCCTAATAAAATATAACAAATTGACACAATAATATCTGCTTAATATCAAGTCGATGTAAGGATTGAGTGAGAAAGGCATTAGTTCATTTTGGAATATTTCCCATTAGTCAAAACTATTTTATTGTTCTTCTGAAATTTAAGTAAATTTAACAACACTTTATCATTGGATATTTGTTATGCTTTGTCAAACAAACAAACAAAAGTATATGTAGAAGAAACGTAAAACATCGAAACATCTTTATGAAATATCACTATGAACAGGCACAGGTTGACTGGGAGGTATGAAGCTCACTTATGGGACAAGCATTGCTGGAACAATGTTCAAACTAAAAAGGGAAAACAAGGTAATTGCTGAATCATAAAGAAAGATATTAATTTCCCATTAAATAGTATTTATTTGTGTCATAGCACTGAAAAATACAATTACATAAACAATATTTCTGCCTACTGAATATAAATCAATTTCAGAGCTAGTATTCACATTAGTAACTTTCTACTACCATATAACACAGGTTCATATACACTGGTTTTGTCAATTATGTCAAGGAGAGTAACATGCATTTTCCCTTATTACTTTAGAGCTATTCATATCTGTGTCATGACATAGCTTGAAGGACAATTTAAAATTTCAGAGGCTAATGAGTATTTTGGTCTTAATCTGCTATGTGACACACATTCACATCATTGTTAATCATTTTTCTAATATACATTACCTGACTTGTTTACTTTTCATTTTGTGGGATCTGCTGCTTGATGACTGTTTCCCTCTGCAATTCCCATAGTTTATTTAGGTATGTGTTTTTATATATGATGTGCTCATGTGACTTGCTTCACCCAATGTCCAACTGCTACTTTTCGATCATATTTGTTAATTAATTTAATCAACTGCTAAATCTTGACTGATTTTGAAACCCAGGTGCATATGATAATGAAGAGGCAGCTGCGCGCACATATGATCTTGCTGCTTTAAAATATTGGGGGCTTGACACTGTTCTTAACTTCCCTGTAATACTTTTATTCATTACTTACACACATGGAAAAATATATATTCTTTATACTTAATATACAAGATTTACCTGTCTTATAACCTAGATGGACATAACTGTTTCACAGTAGAAATTCAAATGATTTTATGCAAATTAAACATGTTAAATAATATTTAAATTCTTCATTGTTACCAGTTGTATCAGTGGTATGATGATGAATCTCTCTCACCGGTATAGATTCATCGTTATGTTCATGTATACATTTATCCTGATTTCTTGATGACTAACTGCTATAATAAAAATATAGGCTAGTAGTTATACTAAGGAGTATGAAGAAATGAAGCATATGTCCAGGGACGAGTACATGGCAACCTTGCGCCGCAAAAGCAGTGGCTTCTCAAGAGGTGCTTCCAAGTATAGAGGGGTAGCAAAGTAAGATTCTTCAAAATAAATAAATAAATAAAATATTAAATAGAAAGATCTAAAGAAGAAACAACAAATAGTACAAAGAACATTAGAAGTTGTGCATACTAATGTCATGCATTATACCATAAAATGTTAATATATCATAACCATCTTTTTATATGATTTTCCAGGCACCACCAAAACGGGCGATGGGAAGCAAGGATTGGACGAGTTTATGGCAACAAATATCTCTATTTGGGAACATTTAGTAAGATCTCTAAGTACTATTCATCTAAATTTGAATCTTAAAAACAAGTGAAAAATGTTACTAAATCCTACTTATTAAATCTTCAGACACGCAAGAGGAAGCAGCAAGAGCTTACGACATGGCTGCAATAGAATACAGAGGTCCAGCCGCAGTCACCAATTTCAACATAAATGACTACATCGACAAGAGTTCTGATTCTCAAAATCAGTCAAAAAGCGACCAATCAACAACTGATGATAATATTCAACAACCGCAGCAGTATCAGGTTCTTGACGAATCTGTTGCGGTCGAAAGCAAAAGTTCATTACCAATGATAGAACAAGAGTTTGCAGACTATGATGGCTACACTAGATTGATCACCGATCACACGTTCACAGACTTGAATATTGATCTGGATTGCTCTAGTGATTTTCTTAGTTTCTTGAACAATGATGCCTTTATAGATGATATAGATTGCCTGTTTGATGAATATTATCTTTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021897664.1	1.1e-73	ethylene-responsive transcription factor WRI1 isoform X2
Swissprot	Q6X5Y6.1	3.8e-74	Protein WRINKLED 1
trEMBL	A0A6A6L4G5	1.1e-73	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54320.1	70.94	2e-77	286	ASML1;ATWRI1;WRI;WRI1	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03459	AT3G54320.3	203	52	2	28	223	30	232	70.94	1e-77	286
AfisC6G03459	AT3G54320.3	94	55	1	149	234	56	149	32.98	4e-08	55.8
AfisC6G03459	AT3G54320.1	203	52	2	28	223	30	232	70.94	2e-77	286

Ortholog group

Species	Genes
Allium cepa	g504624.t1
Allium fistulosum	AfisC6G03459
Allium sativum	Asa8G00131.1; Asa8G03520.1
Arabidopsis thaliana	AT1G16060.1; AT1G79700.1; AT3G54320.1; AT3G54320.3
Oryza sativa	LOC_Os11g03540.1; LOC_Os12g03290.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	58	114	29.7	5.3e-07
PF00847.17	AP2	Domain	157	208	45.7	5.3e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009873	P	ethylene-activated signaling pathway
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019432	P	triglyceride biosynthetic process
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process
GO:1904278	P	positive regulation of wax biosynthetic process
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network