result

Gene information

Detail information of AfisC6G03466

Location

Gene	Chr	Start	End	Strand
AfisC6G03466	chr6	629288607	629295357	+

Sequences

CDS

>AfisC6G03466
ATGACTAATAAGAGCATTGTTATTGAACAAGTATTTGAGCAAATGCTCCAGCAATTAGGCGATCATCATGTGGAATTTCAGCTTCCTGATTCGTTCATGAAGGATAAATCTATGACATATACATTTATCAAGCGCAATGTCTATCTAACCAAAAGGCCTAAAAAGCGTACTGATGATGATGGATTTTGCACCTGTTCCCCTTCAAGAACATCACAGACTTGTGGTGCAGATTGCCTATGTTGGATGCTTTTGTCTACCTGTTCTAGTAGCTGCAAATGTGGAGATTCATGTGTCAATAAACCTTTTCACTTACGTCCTGTAAAGAAAATGAAATTAGTTAAGACGGAGAAGTGTGGAGCTGGAATATTAGCAGAAGAAGATATTAAGCAAGGAGATTTTATTGTAGAATACGTGGGTGAAGTTATTGATGACAAAACATGTGAAGATAGGTTATGGAAAATGAGGCATTGTGGAGAGACCAACTTTTATCTTTGTGAGATTAATCGGGATATGGTTATTGATGCCACATACAAAGGAAATAAATCTAGATTCATAAACCATAGTTGTCAACCTAATACTGAGATGCAGAAATGGACTACTGATGGAGAGACTCGAATTGGTATATTTGCTTCTCGAGATATCAAAACAGGAGAGGAGCTTACTTATGATTATCAATTTGTCCAGTTTGGAGCAGATCAAGACTGCCATTGTGGCGCAGAAGGATGTAGGCAGAAGTTGGGAAGCAAGCCTACAAAACCAAAATATTCTCCTTCAGATGCCGCTTTGCAACTTGTTCTATGTGAAATGGCTACTTCTTCACACAATGATTTGCCAAATGGAGGAACTGATATGGGGTTTCAACATTTCTCATGTAAAAAGAAAACCACTTCACAGAATTGCATTTGGGAAGCCGTAAGAATATGGTGCCCTCAAGATAAGAGGTATTATGGTGGAACAATAGTCGAGTTCGATTGTTATTCAGGAACACACACTATTGTCAGGGAGGACGGCGAGGTCAAAATACTTGATATTTCAGATGGTGATTGGGATCTTTTGCCTGTATAA

Protein

Gene

>AfisC6G03466
GCGATGCTTGAACCCAAAAAAACTAGGGTTTCAAAAATCAACGCCTTCTAAATAATCATCGCTGCATACTCGGCTATTCCATCAGCCATCGTCGGCTCATCCTTGCCTCCTACGCGATATTTTCTACTGCCGATTTGAAGTCCTGCTACAGTCTCTTTATACTGCCACTGCTAATTAAGTATGCGAATTTCTTGTTTTGAGTTGTCTGATTTTCTAAAATTGAGTCGCCCTTTTACTGCTTTAGATTTCATTAACATTGAAAACGCCTGAAGCTAATAACTTATTAGTATTTAGTTATAATCAACTAGTTTTCTGTAAATAATCGTTTAGGAATTGAAATTTGAAAGCCGAAGCTAAAAAACTAATAATTATTTAGGAACTGATACTTACATCGATGCACTATTTTTCCTGCAGTGTGTGTATGTCTACCCGCAAACATTTAGGCAGAATCCAATATGATTTGCCTGTACACTTAACTAGATACACTAGTTTGTAAACTTGATACATTTAGTTAAAAATTAAATACACTGTTTTGTAAACTATTTGAGACTATAAGTATTGCAGCCCACTTAATGTGGCAACTTTTGTATAAAAAGTTGGTACTTTGTTATGTTATAGTTTTATATGTGATTTTATGCTTATATATAAAAAAGAAAATTTAAAAAAATCGACATGTTATATAGTAAGGGGCAAAAAAAATCACATTGGACTTGGGCAACCGATTCTTTGGGCCGCCCCTGCGTCGATTGCAAATGCCAATTTTTAGTGTTGAGTTGTTTCTTTCATTTTCAATTCGCATTTAGTCATTAACTTTTGTACGAAAATTTTAAAGTTTGAATTTGTTAAAAATGTCTCTTTCACGTATACGAGCTGAAATTTTTTTAGGTACTGAGAATTCTATTATTTAGTTTTTAACTTCATTTTGCTTATAAATTAGGTTTGCTATTGAATAACTAAATTGTTGATTTGGTTCACGTCAAGACTTGAATTGGTGCTTTCAACAAGGTGATATTCGATAGAGGGCTGAAAGATAAGAGGAAGAATTTAACTGTTATTTTAAAAAAAATTCAACATCATGACTAATAAGGTATATTGTTTTTAAAATCCAGTTCCATTAATTGAAATGTTGATGTATTGAATGAATTAGTTGATGTATTTTCAAATTTTACTGGTAGAGCATTGTTATTGAACAAGTATTTGAGCAAATGCTCCAGCAATTAGGCGATCATCATGTGGAATTTCAGCTTCCTGATTCGTTCATGAAGGATAAATCTATGACATATACATTTATCAAGCGCAGTATCCTAAAATGGCGGATTAAATCAGTACAAGTTTAACCTTGTGCATTTTTTGCAACTTTTTGATATAAACTAGAGGCCATTCTCATTTAGTTTTGCTTTTCCTGTAATAATAGTTTCCACTTGCATTACATATGTGACTTATTCATATGGATCAAATGGAAAATTATGGTTTTTCTGAGATTGTTTACAATGGTTAAAGGCGTCTTGAATGTTACTTAAGTGAATGATATTTTTGGAACACAACTCTTAGGATTGTGTGTGTGTGTGTGTAGAAGGGGCTTGCATGCTTACATCATTCAACTGATGAGGTGATACAATGTCCTATGAACACAGCATTAGTTATAATTCTTAACTAATATCTTACTGTGGTTGATTCCATGTAAATTTAATGCGGTAAAAGGGTTTGCATTACATGATTGGTAAGAAAAATAACTAGATATTAATACACACACCTTGACATCCTTCTCCCCAAGTACTTTATGATTCAACATTTTGTTATTTAAAATAGTGCAAGATTATTTCTTTAACTTTACCAAGATGTCTATCTAACCAAAAGGCCTAAAAAGCGTACTGATGATGATGGATTTTGCACCTGTTCCCCTTCAAGAACATCACAGACTTGTGGTGCAGATTGCCTATGTTGGTAAGCTATTTCCGGTTATGTATCAAAATGTGTACAGTTTTTGTTGTTGAACACACATTAAATTTTATTCACGTTTTCTTTGTAATTTTCCATTTGTATGTATAGGATGCTTTTGTCTACCTGTTCTAGTAGCTGCAAATGTGGAGATTCATGTGTCAATAAACCTTTTCACTTACGTCCTGTAAAGAAAATGAAATTAGTTAAGGTATGTACATTCACATCTCATATCGATTGAACTACTATATCTGACGTTATTCATTTTAGTATGAAAAACAATGAACATGTTTCTTTATCCATATCCTGCATTAGACATTAGATAGTTTCCAGGAAAGAATATCATTGACTGATTCCCAAAAAATTATCATGAATAATATACTGTCACTGCCATTTGAATGGCTCAGGATATATACAGCTGTTGCTGCCATTGGCTTAATATGAAACACTTACCATTTCCATCTTAATATGAATTTATTATATATTCTCTAGAATCATTTAAAATGTTATTCTTGATAGTTGCCGCAAGGATACAGCTGTGGCGATATATACAATGCATTCCCCTTTTGCTTTGCAAACATTTATAGAGGCTAGATGAGAATGCTTATCACATATGCTACATATTAATATTGCATGCATGCACGTGCGTGCACACACACAGCGATATCGGTATGCAGCATGTGTGTAGCACAGGAAGGAATTTTTTTGATTTATTGTAATGAGGGAGAAATTGTGAGAAATGCAGATTACGGATCTTAAGGCTGGAATAACACTAGAGGGGGGGTGAATAGTGTTTTATGTATTTTTTAAATCTTTTTGAATTTTGTTCAATTTAAACACCAATAAATGCAATTCACAAACACATATATAATCACAGAATCAGACACAGATACAAATATTAAATAAAAGCAGTAAAGGAAAGAACACACCAGGATTTTATACTGGTTCGAAGTTACCCTACGTCCAGTCCCGTACAATCGTACGGATTTCTTTTCAAAAATAATCTTCCAGATTACACCATCGGTTTCAAGGCTACGAGGTACACCCTCCTGTATTCGAGTTCAGGGCAACTCTCTTGATTTAACCAGGTTACAAGATCATCTAATTGATTTCCGAGGCTACAATCACACCCAATTGATTTCAAGGCTCAACCGCACCTTTTACTCAACAGTTTGATTTACAAAAGATTATGTAACTCTGAATAGCATTGAGATCTTATGGAGAGAGTGATAGAGAATCAAACAAGAGATAATCAAGTTTGATTCACTTGGTATTTTGGCAGAGTATAGTTTAGGATTTTTTAGAATAAATGTTAGGATTCTTTAGAATAAATGTGGAAGATGAAGAGGAGAGAAAATAAATGAAAATATGATAAAAATTTGTTTAGAACTTACTGGTATTTATAGTAGAGCAACAACCATATCTATTCGTGAAAGGATACGACGAATAGACACTTCTTTTGAAAATTGAAATTTAAAAATAACGGACACCATGTCGACACGAGGGGTTGAGGGATGTCGACATGCTCAAGGCAAAATTTTTGTTTTTATTTTCTTATTAAAATTGGTTTCTATAATTTGTCAAAACAATTTCTAAACCTTGTAAACATATTTGAATATAGTTTAAACATATAAAAGAGTTTAGAAAATAATTTTTAATATATATAATCTTAATCTATAAAGTGATTTAAAATCTGAGTATATAAATATTTTAAAGCTAAATATTTAGAACAAGAGATAATTTAAAAACAAGGACAATTTTGAAATCAAAATATTAAAAATGATAAAAATAGTTTTGAGGCTAAAATATTTCAAACAAGAGATGTCTTTTTGAAAAGAAAGTTTTGAAAACATTTTTAAAAAACAAGATGTATATTTTTGAAAAACATTTTTATAAAATTAGTGGATATCAAAGTAGGACTACTATATGTTCCACTATATATTGTCGTGGGTTCTATCCCACTAGGGTTTCATTCCTTTAACAGGCTCGAAAGTGGATTCCATTCCACGAATAAATTTCGAATAAAGATGTAAGTGCTTTCAAGAAGTTTTAACATAATTCTAGACTAACTACATTATCTTGTACTGTTTGAAATTTTGAACTCTTGATTTCTTGATACTCATGAGTCTTCAATCTTGATATCTTCGATATTTAAATTCATCAGTCTTGTATTTCTATACTGTGTAGTTTTCATTCTTGGTACCTGCATGTTTATATTCTGCATATACATATATATCTAAACCATAACGTTAGTATTTATATTTTATAACAAGTCCTAAAGTTGTTGTCATCAAAACTATCATCTCAAGAACTAACAGAAATGTGTTTGGAGAAATAAATATAAGAAATGGTTTGCCTAAAGCCAAAATTTGAGTTAGTGCATTAGAGAAAAAGATAAGTAAAAAGAAACATGGATATTATATGACTATCTGTATTAACTTATATTCCATTAAACTTGCATATTTCTATAACTACCTGTATTAATTTATGTCACAATATAGACGGAGAAGTGTGGAGCTGGAATATTAGCAGAAGAAGATATTAAGCAAGGAGATTTTATTGTAGAATACGTGGGTGAAGGTGAGTAAGTGCTTTTAGCTTGGATTTTTTTTGTATGGAATTATAAACCACGATAGCTGACTTTATATTTTTTAACAGTTATTGATGACAAAACATGTGAAGATAGGTTATGGAAAATGAGGCATTGTGGAGAGACCAACTTTTATCTTTGTGAGATTAATCGGGATATGGTTATTGATGCCACATACAAAGGAAATAAATCTAGATTCATAAACCATAGTTGTCAACCTAATACTGAGATGCAGAAATGGTTTGTTTTATTGTAACTTTGTTGATTTGTCGATCTCAGTGGTAACTCGTCTTACAATATTTTTTTAGGACTACTGATGGAGAGACTCGAATTGGTATATTTGCTTCTCGAGATATCAAAACAGGAGAGGAGCTTACTTATGATTATCAGTATGTCGTTTTCTTTTCTTGTGTGAACTTTTACCTATCTGATCCTTTTCAGTATGTATGTTTGATTGTGGTTACGATTATAAGTTGGCTTTTCTATGATTATGATTTTCATGAAGCACTTATGATTATGAAATTTGTAGATTTGTCCAGTTTGGAGCAGATCAAGACTGCCATTGTGGCGCAGAAGGATGTAGGCAGAAGTTGGGAAGCAAGCCTACAAAACCAAAATATTCTCCTTCAGATGCCGCTTTGCAACTTGTTCTATGTGAAATGGCTACTTCTTCACACAATGTGAGCTTTTCTGTTAAATGTTTGATTTTCCATGTTCTCACTCTAGAAGATGCCTAAAAATTATTTTACTTTAGCTAATACATGAAATATTTAGTTTCAGTCATGCAATCATATTTTTGTCTGGTGTTCGTATTTTCCTTTGTTCCTTTTCAATTATAGCATGTACATTCTAAAATTACGACAGCACAGTATTATGGTATTTTACTACTTAACTGACGATGTTCAACTGCCTTGTGAATAGGATTTGCCAAATGGAGGAACTGATATGGGTAAACTGCTATTCCATTGTTGTAAATGTTCTGTACATTTAATATTTCTTGTTAGCTTATGAAGATTCTTCTTGATGATACAGGGTTTCAACATTTCTCATGTAAAAAGAAAACCACTTCACAGAATTGCATTTGGGAAGCCGTAAGAATATGGTGCCCTCAAGATAAGAGGTAATGTTCATTGTGTCTGTATAGTGTTATCATGCCTTGGCAGGCTGAAAGCTGCACTTGTATGTGTATGCTTATTGTAGAAGTTAATGGTCTTCCCACAACAAACCATTGTGTAATTTTTCTCTGTTTTAGTGAATTTTAGAAATATAAAATATCCCACCACCATATGAAAATGGACGTGTCATGTTTATCGTGACATTTGTCAATTTGGTATGATTATGCAAAGTATTTGGTTATAATTACAGTTTACAAAATGGTTCTTTTCTTTCTCTTATAGAAGAAAACTGTTTGCTCTTTCATGTTATCTTTGCTCTTTTATATTTAGCATTTTCAGATTTTAGTACAAATGATACAGAACAAAGTGAAACGCCTTTAATACGAAGAGGTTTTATACTACTGGCATATCATTCATGCAGGTATTATGGTGGAACAATAGTCGAGTTCGATTGTTATTCAGGAACACACACTGTAAGGGCATTTACTGAGTATATAACCTGAACTTTAGTATAACAAATAAGCTATATTTCATGCCTCTGGTAACACTAGTGGAAACTATTGGCAGATTGTCAGGGAGGACGGCGAGGTCAAAATACTTGATATTTCAGATGGTGATTGGGATCTTTTGCCTGTATAATAACTGGAATAAGGTATACTAAATCCATTGTTAGATTGTCAGGGTTGACCATTCTTTTTCAGTCCTTATTTATTTTCCTAATTTATTTATTTATTTCTTTATTTAACAAGAACATATAAAGGTACCTGTATCGCAATTTACACTTGTTTCCTTGCAGCTTCTTGGCTATAACATTGTGGAACTATGGCTAAACCGGATCAGGTTATTACCTGCTATTCTTTGCAACTGATAGATAACAAATATGTACACTAAGTGTAACTGTTTGTTTTAGTTGTTTGGATCTATTTGGTCGCAAAATATGTACGAAAGGTAATTGTTTGTTTTTGTTGTATGTTGTGCTTGTGTAACTAATGTATGTCAGTATGCAATTTTGTTCTTGTTGAGCTGTGTATTTTATTATTGCTACAAGAATTATTGATATTGATTTGATAATTTCTGCACTCTGCTACAGGAGTTAATTCATTTCCAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010933257.1	4.2e-146	histone-lysine N-methyltransferase ASHH3
Swissprot	Q945S8.2	2.6e-108	Protein SET DOMAIN GROUP 7
trEMBL	A0A6I9RWY5	3.0e-146	histone-lysine N-methyltransferase ASHH3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G44150.1	57.51	1e-103	372	ASHH3;SDG7	histone-lysine N-methyltransferase ASHH3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03466	AT2G44150.1	353	136	7	10	352	15	363	57.51	1e-103	372
AfisC6G03466	AT3G59960.1	353	156	7	8	352	13	350	49.29	3e-79	291
AfisC6G03466	AT4G30860.1	249	119	4	8	253	230	471	48.19	2e-64	242

Ortholog group

Species	Genes
Allium cepa	g334788.t1
Allium fistulosum	AfisC6G03466
Allium sativum	Asa8G03510.1
Arabidopsis thaliana	AT2G44150.1
Oryza sativa	LOC_Os09g13740.1; LOC_Os09g13740.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00856.25	SET	Family	119	224	76.3	3.2e-21

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000414	P	regulation of histone H3-K36 methylation
GO:0000785	C	chromatin
GO:0000979	F	RNA polymerase II core promoter sequence-specific DNA binding
GO:0001525	P	angiogenesis
GO:0001702	P	gastrulation with mouth forming second
GO:0001763	P	morphogenesis of a branching structure
GO:0001843	P	neural tube closure
GO:0003682	F	chromatin binding
GO:0003714	F	transcription corepressor activity
GO:0034728	P	nucleosome organization
GO:0005737	C	cytoplasm
GO:0006298	P	mismatch repair
GO:0006303	P	double-strand break repair via nonhomologous end joining
GO:0006368	P	transcription elongation from RNA polymerase II promoter
GO:0007154	P	cell communication
GO:0008270	F	zinc ion binding
GO:0009791	P	post-embryonic development
GO:0010793	P	regulation of mRNA export from nucleus
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046966	F	thyroid hormone receptor binding
GO:0030331	F	estrogen receptor binding
GO:0030900	P	forebrain development
GO:0033135	P	regulation of peptidyl-serine phosphorylation
GO:0035441	P	cell migration involved in vasculogenesis
GO:0042799	F	histone methyltransferase activity (H4-K20 specific)
GO:0044451	C	nucleoplasm part
GO:0044700	P	single organism signaling
GO:0046965	F	retinoid X receptor binding
GO:0046975	F	histone methyltransferase activity (H3-K36 specific)
GO:0048332	P	mesoderm morphogenesis
GO:0048583	P	regulation of response to stimulus
GO:0048701	P	embryonic cranial skeleton morphogenesis
GO:0048864	P	stem cell development
GO:0050681	F	androgen receptor binding
GO:0060039	P	pericardium development
GO:0060669	P	embryonic placenta morphogenesis
GO:0060977	P	coronary vasculature morphogenesis
GO:0097198	P	histone H3-K36 trimethylation
GO:0097676	P	histone H3-K36 dimethylation
GO:1903025	P	regulation of RNA polymerase II regulatory region sequence-specific DNA binding
GO:1990234	C	transferase complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11423	SETD2; [histone H3]-dimethyl-L-lysine36 N-methyltransferase	EC:2.1.1.358	Lysine degradation	ko00310

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network