result

Gene information

Detail information of AfisC6G03602

Location

Gene	Chr	Start	End	Strand
AfisC6G03602	chr6	654181142	654182776	+

Sequences

CDS

Protein

Gene

>AfisC6G03602
ATGTGGAGTGGCAAAAATTTTGCCACGGTCCAAAGCCGTGGCTGTTTACATATTTGCCACGGCTTTGGGCTGTGGCTAATTTGTGTTCAGCCACGGCTTTGAGCCGTGGCAAAAAATACGTTTAGCCACGACTTTAGGCCGTAGCTATTTTTGTTTAGCCACGGTCCTAAACCGTGGCGAAATATACATATGCTGATCTTCTACATTTTACCATAATTTCAATTACAATCAAAGTTCCAATGACTAGTTTACCATAAAATAAAACGATATCAATTTCGATTTCAGGATATAATTCGACACATCTTAAAACTCCTAATAAAAAATTGAAATATCACTGCAAAATAAAAGCAAATTTAATCATAACATATTTTTCAAATATTTTAGTCAACGGAAACACTAAGCTACATTTCAAATATTACTATAGTACAACTGAAACAGTATAGGTGCATTTACTACCATAACATGTTCCGTAGTTTTCACACACATTTGTTTAAAAGTAGAGTCACAAACAATAGTTTTTAACTAAAAGACACATTATGATTAAAATAAGCCCATCAACTAATCGATTCATATCAAAGTCTGAAAGAAAGCTGCAGCCAAGGGGTTAGAGAGTTTGCAATCTTGAAATATGAGAAGTTCGTTCACCTGCGAACAATCAAGACAAGAAATCAGCAAGACAACAAGTTTATAAATCTTGATACATAATTGAAATATTGAAATCAGCCCAGGGGTCACGAAAGCGCATCAGAGGTATCAAAGTATTTGACAAAATATATGCATAAGAATGAAAAGAATTAAAGCCTGCTAATATTTTTTTATACAGATGATAGATATCTTTGTATGTTCCAGCACAAATGATTCTTTCAGTCAAATGAAATCAGTAATAGTTTTACCGTTATCCTGAAAAAAGCAACCCACTTAGTTGCAAGTGGGCAAAAGCCTAATGCTGCTAACATCAGCAGCTAGAGCTTCCAATATAACTTTTTATAAATATTACCGAACCTTATAGAGATAACAAGAAGCGGCAAAGGCTCGGGTACAGCAGAAGCACAAAGCAATGCAAGGAGAAGTGGGAGAACATCAATAAGTACTTTAGAAAGGTGAAGGAAAGCAATAAGAAGAGGCCTGCAGATGCAAAGACCTGCCCTTACTTCCATCAGTTGGACGCTTTGTATAGAAGCAAAGGCTTTAGTGGCAGTGCTGGAACAGCGGGTTTGGGTTCGGATTCAAACCCATTGTTGCATTGTGAGTCCAGTAATGGAGGTGCAAATGGCATGATCATGAAAAAGGTAAGCACTATTATACAGCTTTTGTCTTGATGGTATCTGCTAATTTGGGGTGTATTTTGCATTATTTAACAAAATTACAAGATTAATGGGCAAAATTTAAAATGTTCTTGTAACGCAGTAAATATCTATTGGATTTAAGAAGTAACTTATTATCACTAAGCAAAATGGCAATGTGAAGGTGATCGCGTATTTATTACGTTAATTTCTTGATTTCACAGTTTGTTGCGTTATAAGTACTGAAATTTGACACATGTATTTGAAGCCGGAGGACATCGTGAAGGAATTGACGGTTCGATCAAAAGATTCATCTAATCCAGAGAGAGACGACGAATACGACGAGGAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	PKA50206.1	4.5e-22	Trihelix transcription factor GT-2
Swissprot	Q9C882.2	4.9e-21	Trihelix DNA-binding protein GTL1
trEMBL	A0A2I0A3U0	3.3e-22	Trihelix transcription factor GT-2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76880.1	79.25	5e-22	100		Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03602	AT1G76890.2	58	14	30	87	435	492	75.86	2e-22	100
AfisC6G03602	AT1G76880.1	53	11	30	82	446	498	79.25	5e-22	100
AfisC6G03602	AT1G33240.1	53	12	30	82	473	525	77.36	2e-21	97.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	29	78	50.0	2.7e-13

Gene Ontology

Accession	Ontology	Name
GO:0001158	F	enhancer sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048441	P	petal development
GO:0050793	P	regulation of developmental process
GO:0051239	P	regulation of multicellular organismal process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network