result

Gene information

Detail information of AfisC6G03630

Location

Gene	Chr	Start	End	Strand
AfisC6G03630	chr6	658447527	658448988	+

Sequences

CDS

Protein

Gene

>AfisC6G03630
CGACTCTATCCATCACATGTTTCTTTTCCTTGTATACCTCTATTTATATCTTCCTCTTCTCTCTCATTTTCTTTCATCACATCACAAGTCCAAACATTTCTTTTTCTTTCTTTTCCTCTCTTACTCGTCTCATCAACAGCAATGGATAAAATTCAAGCTCAATCCGAGCACGACGAGGACATGGACCTACGAAGGGGTCCCTGGACCGTCGATGAGGACTTAATTCTCATCAATTATATTTCCACTCACGGCGAAGGCCGATGGAACTCCCTTGCTCGTTGTGCAGGTACATATACAACATCAATACGGTACACTGATAATTCTTAAACTTGTGCAGTGTGCAGGATTTAACAGCTAGCGTTAATCTATTTTGTAGGTTTGAAACGCACCGGAAAAAGTTGTAGACTGCGGTGGTTGAACTATCTCCGACCCGACGTCAGGCGCGGCAACATAACACCGGAAGAACAGTTGTTGATCCTTGAACTCCATTCCAGATGGGGAAATAGGTAATTGTGCACCACCTTCTCTCCACAGTACCATTACTGTACCACGATGCAAATTGCAAATTTATATGTATTTTTAAATGTGTGAAGAATGATTTGGGTGCACACAAGAGTAACAAGTTTATATTTGCGTAGGTGGTCCAAAATTGCGCAGCACTTGCCCGGACGGACGGATAACGAAATTAAGAATTACTGGAGGACCAGAGTGCAAAAGCATGCAAAACAACTCAAGTGTGACGTCAACAGCAAGCAATTTAAAGACGTCATGAGGTACTTGTGGATGCCACGTCTGCTCGAGAAAATCCGGGCAGCCAGCAACAGTTCGGGTAGCACGTCTCTCTACGCTAATTCTGTACCGCAAGCTGGCGGTGCTGTCACCGCCGCCGTGGGTGGCGGGTACGGGCAGGTTTTGGAACAGAGCCCGGAGTACTCTTATGATTCTTCTTCTGTTACGGTCACCGGCGGTGAGAATAAGGGATGCGACCAGGTTCCAGTGAGCCAGTACGATGAGTGTTGGTGGAATAATGGGGCTTTGGTGAGTCCCGGTGGGTATGGTCACCAGCTGGGATTGGTGGACCAGTTTGAGACGTTTAACATTTATGGGGACTTGAATGAAAATTTGTGGAGCTTGGAAGACAATTGGGTAATGCAATAAGAACAACTGTGAAAAATAAGGGAATGTGTATTAGTTTTTGATTTGAATCTAGAAGAAAATAGGAGAAAGAGGTACTGGGGGATTTTAACATTTCCATACCTACAATTCTCTTATTTGCTTGTTTTATATTTACAAACTCACGTAACATTCATTTAATTAAAATCTAAGAATTAAGTTGTAACTTATGGGTTGAGTTGTAATAATACTTATAATTTGTAAATTAAATAGACAATAATTGTTAAGCGTGATGTTCGTATTGTATGGTAAAGGTTTGAAATAAATTAAAAAATAAGTATATTTTCCG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010938192.1	1.3e-86	transcription factor JAMYB
Swissprot	Q2QZJ8.1	8.2e-75	OsJAMyb
trEMBL	A0A6I9SEM3	9.1e-87	transcription factor JAMYB

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G49620.1	66.67	9e-69	256	AtMYB78;MYB78	myb domain protein 78

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03630	AT5G49620.1	210	58	2	11	218	21	220	66.67	9e-69	256
AfisC6G03630	AT1G48000.1	149	38	0	14	162	30	178	74.50	4e-66	248
AfisC6G03630	AT5G49620.2	224	58	3	11	218	21	234	62.50	5e-66	247

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	18	65	59.9	1.7e-16
PF00249.28	Myb_DNA-binding	Domain	71	114	58.6	4.4e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009585	P	red, far-red light phototransduction
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009813	P	flavonoid biosynthetic process
GO:0009845	P	seed germination
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009892	P	negative regulation of metabolic process
GO:0010090	P	trichome morphogenesis
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0080086	P	stamen filament development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network