result

Gene information

Detail information of AfisC6G03666

Location

Gene	Chr	Start	End	Strand
AfisC6G03666	chr6	665063016	665064575	+

Sequences

CDS

>AfisC6G03666
ATGTCCGCCGCCGATCCGCTTGCTGTAGATCCTATTTCCGCTTATCCGCAATCGGACGCCGACGATGCCGCCTCCTCCGACGACGTCGACACCGATCTCGACCCGAAAAGATCCAAACTTGAAGAAGACGAATCCGAACAAAAAAAACCCCAAAATCAGAACTTGGAAGAGTCCCGCCGCCTTTTCCAGCGCCTATGGACCGACGAAGACGAAATTAAGATCCTAAAAGGATTTCTCGATTTCACATCATCTCGTGGCACGACTTTCGCGTCGCATCAGTATGATACGGGTCCATTTTACGATCAGATTAAGAATGAATTGGAGTTAGATTTCAACAAGAACCAGTTGACTGAGAAATTACGCAGGTTGAAGAAGAAATACAGGAATACGGCCAATCGAATGGCAAAACAAGGAAATAATTTCAGCTTTAGGAGCCAGCATGAGATGGAGACTTTTGATATTGCAAAAAAGATCTGGAGTGCTAGTATTACAAAATTAAGCAACAGCGATGATGAATTTTCTAGTCAAATTAACATAAATAATCTTGGATCGAGTAATGAGTTGATTGTTTCTGATAAAAAGAGTGGTCCTCCTTCTAGAAGGAAAAGGAACCGGAAGAGAAATTTGGATGATTCGGGTGCATCACCAGCTTTACTTCAATTGCCTGCTGCACCTGCTAATGAGAATGTTGTTAAAGAAGAAGTTCATATCCTGCCAGTGGAACCTACTGCTTCAGCTGTGCAAACTCCAGTAGTGCAAGCTCCTATTATGCAACCAGTAAATAAAACTGCAAGTGTTAATGGTGTGATTGAGGAGACAGTAAAGAGCTGTATATCACCAATTATTAAAGAGCTTTTAAGTTCGGTCGCTTCCACCAATGGGTGCTTTGGAATGGGATTGAATTTACCACCATCGCTGAATTTCAATAACTTGGGAAGTTTGGAGGATGAGAAGTGGAAGAAGCAACAGATCCTTGAAATGGAGGTATATTTGAAGAGGGTGGAGCTCATTAGGGATCAAATAAAGCTGACACTGGAGGAGCTTAAGGGTTCAAATGAGGAGGCAAAGTTGGAGGGTTAA

Protein

Gene

>AfisC6G03666
ATTCTTGCAACTATTGTAGTGCCATGGGCAAAAGAATACGGACAAGACCAAATCCCTCCTCTAAATCATAGCCTTGAATTAGCCATCGAACGCATCATGTTGCTTGGAATATCTTTGCATCAACTGATATCGGGTCGATTTTAAATCCGAATTCTAATCAAAATAAATCAAACCCTAATTCCTTATTAACCCAAATAAAAGATATCCAATCTTCCTGTTCCGACATGTCCGCCGCCGATCCGCTTGCTGTAGATCCTATTTCCGCTTATCCGCAATCGGACGCCGACGATGCCGCCTCCTCCGACGACGTCGACACCGATCTCGACCCGAAAAGATCCAAACTTGAAGAAGACGAATCCGAACAAAAAAAACCCCAAAATCAGAACTTGGAAGAGTCCCGCCGCCTTTTCCAGCGCCTATGGACCGACGAAGACGAAATTAAGATCCTAAAAGGATTTCTCGATTTCACATCATCTCGTGGCACGACTTTCGCGTCGCATCAGTATGATACGGGTCCATTTTACGATCAGATTAAGAATGAATTGGAGTTAGATTTCAACAAGAACCAGTTGACTGAGAAATTACGCAGGTTGAAGAAGAAATACAGGAATACGGCCAATCGAATGGCAAAACAAGGAAATAATTTCAGCTTTAGGAGCCAGCATGAGATGGAGACTTTTGATATTGCAAAAAAGATCTGGAGTGCTAGTATTACAAAATTAAGCAACAGCGATGATGAATTTTCTAGTCAAATTAACATAAATAATCTTGGATCGAGTAATGAGTTGATTGTTTCTGATAAAAAGAGTGGTCCTCCTTCTAGAAGGAAAAGGAACCGGAAGAGAAATTTGGATGATTCGGGTGCATCACCAGCTTTACTTCAATTGCCTGCTGCACCTGCTAATGAGAATGTTGTTAAAGAAGAAGTTCATATCCTGCCAGTGGAACCTACTGCTTCAGCTGTGCAAACTCCAGTAGTGCAAGCTCCTATTATGCAACCAGTAAATAAAACTGCAAGTGTTAATGGTGTGATTGAGGAGACAGTAAAGAGCTGTATATCACCAATTATTAAAGAGCTTTTAAGTTCGGTCGCTTCCACCAATGGGTGCTTTGGAATGGGATTGAATTTACCACCATCGCTGAATTTCAATAACTTGGGAAGTTTGGAGGATGAGAAGTGGAAGAAGCAACAGATCCTTGAAATGGAGGTATATTTGAAGAGGGTGGAGCTCATTAGGGATCAAATAAAGCTGACACTGGAGGAGCTTAAGGGTTCAAATGAGGAGGCAAAGTTGGAGGGTTAAGCATTGAGGTTTATTTTGGAATCTTTATTTTGTTAAATCTAATTTAATTACGGTTGTTTTAGGTATGTTATAGTTTGAATGGTGGTATAGGTAACTTTTTGTTATTTTACTGTTGTTATATCATATATACATTTGGGGTTTGATTAGTCTTTATTTAGACTACACTTCTTTTTGCAAATTCAGTTTGTATAGTGTAGTTAGTTTATTGAATAGGTTAAGTCGTAATCTTGTCATTTTAACTTATTAATCATTAGTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020271749.1	1.0e-67	probable transcription factor At3g04930
Swissprot	F4K5T4.1	2.5e-42	Storekeeper-like protein At5g28040
trEMBL	A0A804I9T5	1.7e-59	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G28040.1	37.67	4e-51	199		DNA-binding storekeeper protein-related transcriptional regulator

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03666	AT5G28040.1	369	165	15	14	349	85	421	37.67	4e-51	199
AfisC6G03666	AT3G04930.2	132	52	5	29	159	110	233	53.79	6e-34	141
AfisC6G03666	AT3G04930.1	141	59	5	20	159	101	233	51.77	8e-34	141

Ortholog group

Species	Genes
Allium cepa	g246835.t1
Allium fistulosum	AfisC6G03666
Allium sativum	Asa8G03351.1
Arabidopsis thaliana	AT3G04930.1; AT3G04930.2; AT5G28040.1
Oryza sativa	LOC_Os01g14720.1; LOC_Os03g25430.1; LOC_Os07g44200.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04504.11	DUF573	Family	62	160	107.2	4.5e-31

Gene Ontology

Accession	Ontology	Name
GO:0005829	C	cytosol
GO:0005730	C	nucleolus
GO:0006351	P	transcription, DNA-templated
GO:0009507	C	chloroplast
GO:0044212	F	transcription regulatory region DNA binding
GO:0016592	C	mediator complex
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network