result

Gene information

Detail information of AfisC6G03698

Location

Gene	Chr	Start	End	Strand
AfisC6G03698	chr6	669395906	669399437	+

Sequences

CDS

>AfisC6G03698
ATGTTTATGATTATATGTGCATACAGGCCTGATAATGATTTTGTAGAATTACTGTGGGAAAATGGTCCTATTGTGATGCAAGGACAGTCAAACAGGCAAAAAAAGACATCTTATATTCCATCCTATAATCAGAAAATTCATGAAGATAAGGATACAAGAGATCAAGAAATTACTAAAATCGGTCAATTTACTGCCATGGAGTCCCATTTTGCACCTTCTGTGCCTTGCACAAACATGGGACTAAGTACTCAAGATGATGATATTAGAATGAACCCTTGGATGAGTTATTCATTTGAAGATCCGTTAAGTTCAGAGCTTTTCTCCGAGTTAACTGGTGCGGATAGAAACAATAGAAGTAATTTAGACAACGGGAACAGCTCAAAAATCAATCCAGTTGATATCAATAACAAGTTTTCAAAAATGCAACATTGGCAGTTTCAGAAGTACGATGTAGCATCAAACTCAAAGCCTTTGCATGCAAATAATGGTTCTGGTTTGACAAATTTTGCTCACTTTTCAAGACCTTTATCGCTCTCTAAGGTGACAAATGAGAGTTTGGATAGATGTAAAGCAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGCGAAGGGGGAAATGAAGGCTATTTGCCATCAAGATGCATCTACAAATAAATGTATAAATGATAAGATTACTAATACTATATTAGGTGAAAATCAAGTTAATGTACATAGCTCAAACTATGGTGCTGAAAAGTGCCTCGAACCGATTGTCGCTTCTTCTTCAGTATGCTCGGGAAATAGTGTCATGGCAGCTTCTAGTGATCTGAAGACTATAGAAAAAAGGAAGAGCAGAGAGGAATCTGAATACCAAAGCGATGATATTGACGATGAATCGACCGGTCTGAAGAAAACCACACCAGGAAAAGGAGGCTCAAGCGCAAAGCGAAGTCGTGCTGCAGAAGTTCATAATTTGTCAGAAAGAAGGCGAAGAGATAGAATAAACGAAAAAATGAGAGCATTACAAGAACTCATACCCAATTGCAACAAGGTGGACAAGGCATCAATGCTTGATGAAGCCATTGAATATCTTAAAACACTCCAGCTACAAGTTCAGATGATGGCAATGGGAAGCGGGTTATGCATGTCACCTATGATGCTATCTCCGGGCATGCAACACATGAGAGCACCCACAATGGCCCATTTCTCAGCAATGGGAGTAGGCATGGGAATGGGCATGGGATTGAACTACCCTATGCTCGACATGAACGGCATTCCAATATCGCATATGCACGCATCTCAGTTCCCAGGGTTTGGGATCTCGGGACATGGGCAAGGCATGCCATTGCCTCAGCCCTCCCTCTTCAACCCTTTGTCTTCTTTACTCCCAAGAGGAAATATGATGAATGAAGCGCCCTTGCAAGTTCCAGAACTGGGAACTTCCTTACGGTTCAATGATCAAAGACAGCAACAGCAATGTGCTAATTTAGAAGCCACGCCCAAAACTAGTAATGCTGGATCACGGGCTGATACAGGGCATATAAGCAATGCTATAGGACACACTGGTCGCAATGCTGAAAAGATCGAGTAG

Protein

Gene

>AfisC6G03698
TTTATTCTCTTCAGCACTTGTAGAAATAAGGAACAAATCGTAGTAGCCTTGTCAAGCTTTGTTTTCTGTTCCAAAACTAATGTAAATTATTCAGGATTCATCAACAAAAGAGGTCAAGCTACTACAAACTAAATCATTTCTTAATTTTTAATTTCCCCTTTTTTCTTCAGGGTTATTTTCATTCCGAGGGTTTGCTCCAAGTAGATACTTGTTAGTCTATAAAATTTGCTACAAACTTTCAAGTTTTTGAGGTTTGCTACTCAGTAGGATTCAAGAAAATATATTCAAGTGGATTTAGTGATAATTCTAAAGTCTACTTCTGAATAGTCTGCTTCTATAGTCAAAAGCACAACTTGAATCTACACAAATCAAGATGTCTGATCCATCTTCCTTCATGTAAGTTTATTGAAATTCTAACAGTATTCGGACATTAATTTTTCTGATGTTTATGATTATATGTGCATACAGGCCTGATAATGATTTTGTAGAATTACTGTGGGAAAATGGTCCTATTGTGATGCAAGGACAGTCAAACAGGCAAAAAAAGACATCTTATATTCCATCCTATAATCAGAAAATTCATGAAGATAAGGATACAAGAGATCAAGAAATTACTAAAATCGGTCAATTTACTGCCATGGAGTCCCATTTTGCACCTTCTGTGCCTTGCACAAACATGGGACTAAGTACTCAAGATGATGATATTAGAATGAACCCTTGGATGAGTTATTCATTTGAAGATCCGTTAAGTTCAGAGCTTTTCTCCGAGTTAACTGGTGCGGATAGAAACAATAGAAGTAATTTAGACAACGGGAACAGCTCAAAAATCAATCCAGTTGATATCAATAACAAGTTTTCAAAAATGCAACATTGGCAGTTTCAGAAGTACGATGTAGCATCAAACTCAAAGCCTTTGCATGCAAATAATGGTTCTGGTTTGACAAATTTTGCTCACTTTTCAAGACCTTTATCGCTCTCTAAGGTGACAAATGAGAGTTTGGATAGATGTAAAGCAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGCGAAGGGGGAAATGAAGGCTATTTGCCATCAAGATGCATCTACAAATAAATGTATAAATGATAAGATTACTAATACTATATTAGGTGAAAATCAAGTTAATGTACATAGCTCAAACTATGGTGCTGAAAAGTGCCTCGAACCGATTGTCGCTTCTTCTTCAGTATGCTCGGGAAATAGTGTCATGGCAGCTTCTAGTGATCTGAAGACTATAGAAAAAAGGAAGAGCAGAGAGGAATCTGAATACCAAAGCGATGTATGGTTTTTATTCAAAGACGTCTTCGTATGGCATTCATAGTAATCATGTGTCAATTAGTTTTAATGCTACCCTGGGCCTTTTTGAGTTTAGGTCGGGATGCACAATATATAAACTAACTTAGTGTTATAACACGGTTAGTTTTTTTGTGTTATAACACATTATCATACTGCTCTTGGAAAGGAAATGGAATTTTTAAGTATCAGGCAGTCAAATTTCAGTTTGTTGGGCGGAAATAGTAAGGGATCAGTTTGATTCCACTTAATATATGTTTGTCCAGTATTAATGAAATTTTATGTACTCAAACTAATAGTACAGATCAAGTATGCAACACTCACCGATAATTTATCTTCTCGTTTGCTAGGATATTGACGATGAATCGACCGGTCTGAAGAAAACCACACCAGGAAAAGGAGGCTCAAGCGCAAAGCGAAGTCGTGCTGCAGAAGTTCATAATTTGTCAGAAAGAGTGAGTTAACATTGCAACTGATATTTCATTTACATTTATGATGAGATAAAACTAATAATATAACATGCACTAATTGTGTATAGAGGCGAAGAGATAGAATAAACGAAAAAATGAGAGCATTACAAGAACTCATACCCAATTGCAACAAGGTACATTTGTTATGTAACTCTATGTGACACTCAAACATTGCAATATTTTGTTGTTTATTTATATAATTAGAATACAAGATTATTGATTCTTCTATATTTACTTTTTTTTTTGAAGGTGGACAAGGCATCAATGCTTGATGAAGCCATTGAATATCTTAAAACACTCCAGCTACAAGTTCAGGTTAACTCTGTACTTAAAAATATCTAATTTGAACTTCTACATGATAATCTTGCAAGAAAACACAGAAAAGTACACCTCAATCTGTATTAGAAGTGTTTTTCCCCAAACCACATGTCTTATGTTGTTAAATTTTGGAAACTACTCGATCCAAAGTGAACATGTGAGATTTGGAGCTGTCTATATAGCTTCCAAAAAGTAACCACTTCCCTTTTTAGAAACCAGCTCAAAAAAATCCATTTCGATACGAAAAATAATCCGACTTTTAATGTTGTTTTTCCCTTATTTCAATGGATATTTTGAAACCAGACAAACAAATATATAAACATATTTATTTTTCAACCTACAAGCTTTTTAAACTCGAATGACCTTTCTTTGATCCGAATTAATTATCATCTACTCTGCTACAATACCAGAGAAGAGGTTTACCCATTGTTTCGAACCATTTGATAAAAGATCTAATGGTTGGAAACAGATATTAAACTTTGCTAAAATAAACTGGTGCTCTAAACTATTAGATCTTTGATCCAGTGAGTCAGGAAAATGAGTTTAGAACAAGATGTTTGCACATTATATCACATCAATTTAATATACAAGATATGACCACAATGAAAGAATAATGTAATAATAAATTTTGAAAAAATAACACAGATGATGGCAATGGGAAGCGGGTTATGCATGTCACCTATGATGCTATCTCCGGGCATGCAACACATGAGAGCACCCACAATGGCCCATTTCTCAGCAATGGGAGTAGGCATGGGAATGGGCATGGGATTGAACTACCCTATGCTCGACATGAACGGCATTCCAATATCGCATATGCACGCATCTCAGTTCCCAGGGTTTGGGATCTCGGGACATGGGCAAGGCATGCCATTGCCTCAGCCCTCCCTCTTCAACCCTTTGTCTTCTTTACTCCCAAGAGGAAATATGATGAATGAAGCGCCCTTGCAAGTTCCAGAACTGGGAACTTCCTTACGGTTCAATGATCAAAGACAGCAACAGCAATGTGCTAATTTAGAAGCCACGCCCAAAACTAGTAATGCTGGATCACGGGTATGATAACAGTGTATGTCCCTCTGGTTTCTATACATATGTCTGCGTCACCCTATTCATTTGATATATTTACAGGCTGATACAGGGCATATAAGCAATGCTATAGGACACACTGGTCGCAATGCTGAAAAGATCGAGTAGATTTTGCGACTTTATCGCACGCTAAATGAGCTCTGAACATAAGCCGGACTTTAGAGAGATTTTGCGAAGTGAAGAGTGATTATACTTGAGAGTTGTGTGATTATGTGTTATATGAATCACCTGCAGCAAATTACCTTTTGTTATGCATGAAATGTGAGATATACTACATTTTTATCAGAATCTTCTTTAAATTTATGCATAGATTATTAATTTTTATCACTATTACAAATGGT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273291.1	5.0e-103	transcription factor PIF3-like
Swissprot	Q0JNI9.2	3.9e-44	Basic helix-loop-helix protein 105
trEMBL	A0A5P1EDZ0	3.6e-103	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G09530.1	37.55	1e-49	194	PAP3;PIF3;POC1	phytochrome interacting factor 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03698	AT1G09530.2	466	227	18	10	439	25	462	37.55	1e-49	194
AfisC6G03698	AT1G09530.1	466	227	18	10	439	25	462	37.55	1e-49	194
AfisC6G03698	AT2G46970.1	211	102	6	251	452	167	364	41.23	8e-33	138

Ortholog group

Species	Genes
Allium cepa	g11224.t1
Allium fistulosum	AfisC6G03698
Allium sativum	Asa8G03334.1
Arabidopsis thaliana	AT1G09530.1; AT1G09530.2
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	316	362	51.4	7.1e-14

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006783	P	heme biosynthetic process
GO:0046983	F	protein dimerization activity
GO:0007623	P	circadian rhythm
GO:0042802	F	identical protein binding
GO:0009409	P	response to cold
GO:0009506	C	plasmodesma
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009585	P	red, far-red light phototransduction
GO:0009641	P	shade avoidance
GO:0009693	P	ethylene biosynthetic process
GO:0009704	P	de-etiolation
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009959	P	negative gravitropism
GO:0010047	P	fruit dehiscence
GO:0010100	P	negative regulation of photomorphogenesis
GO:0010161	P	red light signaling pathway
GO:0010187	P	negative regulation of seed germination
GO:0010244	P	response to low fluence blue light stimulus by blue low-fluence system
GO:0010313	F	phytochrome binding
GO:0010600	P	regulation of auxin biosynthetic process
GO:0010928	P	regulation of auxin mediated signaling pathway
GO:0015995	P	chlorophyll biosynthetic process
GO:0048440	P	carpel development
GO:0048767	P	root hair elongation
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12126	PIF3; phytochrome-interacting factor 3	EC:-	Plant hormone signal transduction	ko04075
K12126	PIF3; phytochrome-interacting factor 3	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network