result

Gene information

Detail information of AfisC6G03831

Location

Gene	Chr	Start	End	Strand
AfisC6G03831	chr6	687727885	687729514	+

Sequences

CDS

Protein

Gene

>AfisC6G03831
ATGAAAGAAGTGTCTTGAGCAACACGTCTCTTAATCTTACTTGCAATTTGGAATCTCCTCAATATATATGCGCGTCTTTCTCTTCTCTTATCTTCTTTCTTAATAATTCTATTTCAAAAGCTTCTTCTCCATTTTCAATTCCGAATTCTTCTCTCTTGGGTCTACAACTTTCTTGTGCTTTGCAGTCATCATTTATTGTTAATTAATTCATTTCAAAGTAACAGTATATTTTAAACAAGTACAAGTGCAAGGATGGACGAGTCTATAAACTTGCCACCAGGTTTCAGATTTCATCCTACAGATGAAGAAATCATAACTCATTACTTGTCTCCTAAAATTCTCAATCAAAACTTCACTACGATCCCTATTGGAGAGATCGATTTGAACAAGTGCGAGCCTTGGGATCTTCCTAGTAAGTATATATTTTTCTTTCAAACTTTCTGTTATGTATTAATGTTTTATGATTTTATATTTATCAAATAAATAATTAAATATGTAGGTAAAGCGAGGATGGGTGAAAAAGAATGGTACTTTTTTTGCCAAAGAGACAGAAAGTACCCAACTGGAATGAGAACTAATCGAGCTACAGAAGCAGGATACTGGAAGGCTACGGGGAAAGATAAAGAAATATTCAAAGGCAAAAACAATACCAAGGTTCTTATCGGCATGAAGAAAACGCTTGTATTTTACACAGGTAGAGCCCCTAAAGGAGTTAAAAGCAACTGGGTCATGCACGAGTTCAGACTCGAAGGCAAATCTGCTGAGGCCAACTTTCCTAAACCCGCAAAGGTACAATCTTTACACCAAAGATGTATTCTTTTGTGTGCTTTATGCTGCTTTTTACATCAAAAATTTAAACTTTTGCATGTTTTATGCAATGTTTTAATCTTTTTATTTTTTGCTTGAATTGTAGGATGAATGGGTGGTTAGTAGGGTGTTCCATAAGAGCAACGGAGCAAAGAAAAGTCCGATAAGCGACTACTTTGGTTCTGGGAGTTTGCCAACTTTAATGGATCCGACTCCGTTCGTAAATAACGAGGATCTAATCAATAATTTCGACATGATGAATTCTTCATGCTTTTACAACGTTCCAGGATTAGATGATACACTGAATTTCAATCAAAATTATCAACAAATGGGGCAAGTGAATAGTTCAACTTCAAACTACAACTACTTGCATCATAATCCGATGATGAAAATGGAGCAATTTCCAAAAAGATCAATGGTTAGTGATGACACCGGGCTTAGCACAGATAGAAACACGGAAATTTCTTCTGTCGTTTCAGCACATGAGATTAAGAATGAGTTTGAAATGCCTACTGTTGGTTCAGTGTTGGATTTGGAAAACATGTGGAAGTTCTAAGTAGATTACTGATGCTAAAGTTTTAGAAGGCCTAACAAAAAACTTGAAGGCGATGATGATGACGGTTGTTTTGTTTATGTACATAACATAGATTGAAGATTTGTATTTTAAAGTTATACAGATTTGTTAACTCATTTTATAGAGAATTTGCATGAAAAAACATATATTGTGTGTGGGTTGATTAGGTGATGATTACTAATGTACAATTCTATTCTTTTTGTTGAAACATTGTGATAAGTTCTTTCTTGTTTGATTGCTATATAGATT

Functional annotation

Database	accession number	e-value	annotation
nr	AUR26472.1	3.4e-104	NAC2716, partial
Swissprot	Q9FK44.1	3.4e-77	NAC domain-containing protein 87
trEMBL	A0A3S6RHW8	2.4e-104	NAC2716 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G18270.2	54.25	8e-80	293	ANAC087	Arabidopsis NAC domain containing protein 87

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03831	AT5G18270.2	306	108	9	2	284	16	312	54.25	8e-80	293
AfisC6G03831	AT5G18270.1	306	110	9	2	284	16	312	53.59	5e-79	291
AfisC6G03831	AT5G61430.1	305	104	7	2	271	11	306	51.48	3e-77	285

Ortholog group

Species	Genes
Allium cepa	g494334.t1
Allium fistulosum	AfisC6G03831
Allium sativum	Asa8G03231.1
Arabidopsis thaliana	AT3G04060.1; AT5G18270.2
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	8	136	102.8	1.2e-29

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0010072	P	primary shoot apical meristem specification
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010200	P	response to chitin
GO:0010223	P	secondary shoot formation
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0046982	F	protein heterodimerization activity
GO:0048467	P	gynoecium development
GO:0048527	P	lateral root development
GO:0048759	P	xylem vessel member cell differentiation
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051782	P	negative regulation of cell division
GO:0090400	P	stress-induced premature senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:1903648	P	positive regulation of chlorophyll catabolic process
GO:1904250	P	positive regulation of age-related resistance
GO:1990110	P	callus formation
GO:0090709

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network