result

Gene information

Detail information of AfisC6G03893

Location

Gene	Chr	Start	End	Strand
AfisC6G03893	chr6	698737552	698738988	+

Sequences

CDS

Protein

Gene

>AfisC6G03893
ATGAATGCCCTGCAAGGAGTGATGCGGGAACTAGGGATTAATGCAGAGGAAATGATTAGTGAAATGATTAGTGATAATAATGGGCTTATGCCTCCAGGCTTCAGATTTCATCCTACCGACGAAGAGTTGATTACTTTTTATTTGGCTTCTAAAGTGTTTAATGGTGGCCCATTTTGTGGTGTTGACATTATGGAAGTTGATCTTAATAGATGTGAGCCTTGGGAGCTTCCTGGTAATTTTTACCTGTTTAGCACTAATTTCATCTAAAATTTTGAAGTATAAATTAAACTTTTTTAGTGATGTATGCATAATGTAGATGATGAGGTTTCGAAACTTAGCTAAAATCAAAGCTTATAACAAGTCGAACCATCGCTAAAATTTCATAGTATAAAATGTTCCAAGAACCCTAATAAGTACTAACTATTTTGACGTAGTAAATCTTTCAAAGAAACCCCTACGTTACTTCCTTCAACAAAATTATAATATCCTTTAAAACCTAAGCAACTTTCTTGATTGTGTTGAAAAGTGTAAGTAATGATATGAGATGTATACGTAGACATGGCAAAAATGGGGGAAAGAGAGTGGTACTTTTACAGCTTAAGAGACAGAAAATATCCGACCGGTCTAAGGACAAATAGGGCAACTGGAGCTGGATATTGGAAAGCCACTGGCAAAGATAGAGAAGTTCATTCTGCATCATCTGGTAACTCACTCGTAGGTATGAAGAAAACGCTAGTGTTTTATAAAGGGAGAGCGCCGCGTGGTGAGAAGACTAAGTGGGTGCTTCATGAGTATCGACTTGAAGGCGATTTCTCTTGCCGCCTTGCTTGCAAGGTATGCTCGTATTTTCGTGAAAACCCTAACTTCTAAGTTAATCTATATATAAATGTAGGCTTAACATCAGTTTATAGTCAGGGATATTATAACAAGTTGTTCATTATATGTAGCATAAATATAGTGTTTATTAAAAGGAATAAACCTAGTTTCAACAAGGAAAAATAAAAGGCAGTTCTTTATGAATTGTTTTATGTTTTTCAGGAAGAATGGGTGATATGCAGAATATTCAACAAGTCAGAAATAGTTTCTAACACTCAACACAAGAAAAATTATCAACTGCACTCAAAACAAAGCAACTTATTTAGCACTCATCATGGTTTTAATCATCAAAGTTCAACAAGTACTAATCATCCGCTTCCAAACCTACAAACCCTAGAAAGCCCAATTCAATCCCTGCTCAATAACAACAATCCTTTCTTAATCAACCATCATGATCATCATCATAACCTTAATCAACTCTCTAATCTGTTTATTCCACAACAAGAACAGTGCCAATTTCAGGAAGATGCCTCTGCCACTGGTTTTTCAGATTGGCTTGATGTGTATGAGATGGCAATAGGAAGTAGCACTAGCCAGCTGGATTTTGGAGCATTGTGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020114268.1	3.4e-80	protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851.1	6.8e-73	NAC domain-containing protein CUC3
trEMBL	A0A6P5HLP2	2.5e-80	protein CUP-SHAPED COTYLEDON 3-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76420.1	58.65	8e-75	276	ANAC031;CUC3;NAC368	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03893	AT1G76420.1	266	87	8	13	266	3	257	58.65	8e-75	276
AfisC6G03893	AT5G53950.1	161	45	3	30	187	17	175	68.94	6e-62	234
AfisC6G03893	AT3G15170.1	165	51	3	25	186	15	177	66.06	4e-61	231

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	31	159	91.6	3.8e-26

Gene Ontology

Accession	Ontology	Name
GO:0000975	F	regulatory region DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009414	P	response to water deprivation
GO:0009531	C	secondary cell wall
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009741	P	response to brassinosteroid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0010072	P	primary shoot apical meristem specification
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010223	P	secondary shoot formation
GO:0010981	P	regulation of cell wall macromolecule metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045491	P	xylan metabolic process
GO:0046982	F	protein heterodimerization activity
GO:0048467	P	gynoecium development
GO:0048527	P	lateral root development
GO:0048759	P	xylem vessel member cell differentiation
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051782	P	negative regulation of cell division
GO:0090058	P	metaxylem development
GO:0090400	P	stress-induced premature senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:1903648	P	positive regulation of chlorophyll catabolic process
GO:1904250	P	positive regulation of age-related resistance
GO:0090709

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network