result

Gene information

Detail information of AfisC6G03947

Location

Gene	Chr	Start	End	Strand
AfisC6G03947	chr6	707641566	707643143	+

Sequences

CDS

>AfisC6G03947
ATGGGTGATGAATTACCTGATCTAGAGCATCAACTATTTAGCTATAAAGCTTCTAAAAGCAAAGAGCCAGAAGAAAGGTGTGTAGACTCAGAGTTATGGCAGGCTTGCGCTGGAAGCACGGTGAAAATGCCAGCAACCAATTCTTTAGTGTACTACTTTCCCCAAGGTCATGCAGAACATGCTCGATGTCCCTTTGATGATAATCTACTCAGTCTGATGAGTAAACCTTCTTGTTCTCATGTGCTTTGCCGTGTGAATTCTTTGAAATTAATGGCAGACCCCCAAACCGACGAAGTTTTTGCCAAGATCCGCCTTGTCCCCATCAAGAAAAATTCAAGATCCGATCATTTGGTCGAAGAGGAAATCACGAGGAATGATGATTCCCCAGTTGAAGCAGTACCCATTACTTTTTGGAAGACATTAACTCAGTCTGACGCAGAAATAGGAACCAGCTTTACAGTGCCTAAGCAATATGCAGAAACATTATTTCCACAGTTGGATTATAAAAAAGAGCTACCGGTTCAGTACATATACTGCATAGATGTGCATGGAGTGTGGTGGAGTTTTAGACATACATACAGTGGATCTCCTCAACGCCATTTGTTGAGTGATGGCTGGAGCATGTTTGTGACGCAGAAGAAGCTTGTGGCAGGGGATTCGCTACTGTTTATGAAGAAGAATAGTGGAGAGACCCATGTAGGTATCAGGAGGAAGAATGGAGGGCCTGATAATCATCGTTGGGCACCGCCTTCCTATAATTCTACTGTGAGATTTCGAGCCAGTAGTAGTAATAATAATAATATGTTGAGTAAGATAAGCAGTAGGAGGATAAGAATGGAGTCGGTGATGGAGGCGATGAGGCAGGCATGGAGTGGGCAGACATTTGAGGTAGAGTACTATCCAAGGGCAGGCACACCTGCATACTGTGTGAAGGCATCACTGGTGAGAAAGGCAACAATGATACAGTGGTGGCCTGGAATGATAATCAAAATGGCATTTGAGTCCGATGATCAGTCAAAGATTAGTTGGGGTTTGGGAACGGTAAATGAAGTTGGAGAGCAGTATCAATGGAGAAGACTTGACGTGAGCTGGGGATGGGAAGAACTAAGTAAACAATTGAAAGGTGTGAAGGGAGTTAACCCATGGATGGTTGAACCAGTTTCACGCACGTTCATGCCTTCTCTACAATTCAGTGCAGCATCTTTCATTCCTCCACCCAAAAGGCCTTGCTTGCAGTTGCCACGTTTGCCTCTTTATTCATCTTCTACTATGCTTCCTTTTATATCCACTGGCTACCAATTTCAAATGCCGCAACAGCAGCAGCAGCAGCAGCATCAACAAGGCATACAGGGATTCAGGCATGATGATTACTCTTCTTTGTCCCCTCTTTCCAATCTCAATGAGCACACACCAAGTTTTCGACTTAGGGATAATGAAGTTGGTAAGGACGATATAGCCTGTGTGCTAACCCTTGGAGTTGGCCATTCAGCTGCTACTGCAAACGAGCAAATGTGTGATGTTGGCACTTCTGGGAATGATAATGATGCTGGTCGTGATGATGCATTGCCCCAAGATTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259738.1	4.9e-90	auxin response factor 18-like isoform X2
Swissprot	Q6K223.1	8.4e-87	Auxin response factor 8
trEMBL	A0A5P1EYY5	3.5e-90	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	44.30	4e-88	322	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03947	AT4G30080.1	456	216	13	25	457	13	453	44.30	4e-88	322
AfisC6G03947	AT2G28350.1	528	245	14	24	492	3	512	39.02	2e-82	303
AfisC6G03947	AT1G77850.1	467	268	11	26	471	14	463	34.48	1e-66	251

Ortholog group

Species	Genes
Allium cepa	g245042.t1
Allium fistulosum	AfisC6G03947
Allium sativum	Asa8G03089.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	137	239	57.6	8.4e-16
PF06507.10	Auxin_resp	Family	286	358	57.0	1.6e-15

Gene Ontology

Accession	Ontology	Name
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0007389	P	pattern specification process
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009743	P	response to carbohydrate
GO:0010154	P	fruit development
GO:0010208	P	pollen wall assembly
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0048366	P	leaf development
GO:0048441	P	petal development
GO:0048442	P	sepal development
GO:0048589	P	developmental growth
GO:0048829	P	root cap development
GO:0048830	P	adventitious root development
GO:0051301	P	cell division
GO:0052543	P	callose deposition in cell wall

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network