result

Gene information

Detail information of AfisC6G03955

Location

Gene	Chr	Start	End	Strand
AfisC6G03955	chr6	708970270	708971964	+

Sequences

CDS

>AfisC6G03955
ATGGGTGACGAATTCCCTGATCCAGAACATCAAGTATTTGGCTATGAAGTTTCAAAAGCAAAAGGGCCAGAAGAAAAGTGTGTAGACTCAAAGTTATGGCAGGCTTGTGCTGGAAGTATAGTGAAAATACCAGCAGTCAAGTCCTTGGTGTACTACTTCCCCCAAGGTCATGCAGAACATGCTCAATGTTCCCTTGACGATAATCTTCTGAACCTGATGAATAAACCTTCTTCTTCTCATGTGCTTTGCCGTGTGAATTCTTTAAAGTTAATGGAAGACCCCGAAACCGATGAAGTTTTTGCCAAGATCCGCCTTGTCCCCATCAAGAAAAATCCAAGTTTCGGTCATTTGTTCGAAGAGGAAACCATGAGGAATGATGATTCCCCAGTTGAAGCAATAACCGTTCCTTTTGTGAAGAGATTAACTCAGTCTGATATAAACAATGAACGCCATTTTACGGTGCCTAGGCAATGTGCAGAAACAATATTTCCAGGGTTGGATTACGAAAAAGAGCCACATGTTCAGTACATAACCTTCACAGATGTGCATGGAGGGATATGGAGTTTTAAACATGGATACAGAGGGACTCCTAAACGACATTTGTTGACTACAGGCTGGAGCACGTTTGTGAAGCAGAAGAAGCTTGTGGCAGGGGATTCAATTGTGTTTATGAAGAAGGAGAGTAATGGAGAGATTCATGTAGGCATCAGGAGAATGAAGGGAGGACATGATCATCATCGCTGGACTCCTCCATCTTCCTGTAATTCTAGGATGAGTTTTCAAGATAGTAATAAGAATAATATGTTGAGTAAGATAAGCAGTAGGAGGATAAGGATGGAGTCAGTGATGGAGGCGATGAGGCAGGCATGGAGTGGGCAGACATTTGAGGTAGAGTACTATCCAAGGGCAAGCACACCTGTATACTGTGTGAATGCATCACTGGTGAGAAAGGCAACAATGGCACCGTGGTGCCTTGGAATGAAAATCAAAATGGCAGTCGAGTCCGATGATCATCCGAAGACATGGTTCATGGGAACTATTAGTGGTGTTGATCAGGGTGGCGAGGAGCAGACTCAATGGGAAAAAAAGTTGCTATGGAGACGACTTGAGGATTATCTATCTTCTACTACTCCTCTTTCTCCTTTGATCTCGAGCACCCACCGACTTAAGCTGCCACTACCACAACCACTACCACTTCCTTACTCCAATACAGTCTCAGGCATACAGGGATTCAGGTGCCATAACGATGACAAATCGATGCATTACTCTTCTCCCCGAAATTTTCATATAGGCAGTAAGTTGATCACTACGAATAAACCTAACCCCAATTTTCCTTTTGAGGATAATGAAGTTGGTAAGAGTGATATAACTTGCATTGAAACAGCTGAAGTTGGTCATTGTGCAGCTACTGCTTCAAATAACTCATGTGATGACGCAACTTACAAATCAATGGTGACGGATGAGCAAGAGGAGCAGCAAAATTCTGATGTTAGTACTTCTGGGAACGATGTAAAATATGATATATGA

Protein

Gene

>AfisC6G03955
ATGGGTGACGAATTCCCTGATCCAGAACATCAAGTATTTGGCTATGAAGTTTCAAAAGCAAAAGGGCCAGAAGAAAAGTGTGTAGACTCAAAGTTATGGCAGGCTTGTGCTGGAAGTATAGTGAAAATACCAGCAGTCAAGTCCTTGGTGTACTACTTCCCCCAAGGTCATGCAGAACATGCTCAATGTTCCCTTGACGATAATCTTCTGAACCTGATGAATAAACCTTCTTCTTCTCATGTGCTTTGCCGTGTGAATTCTTTAAAGTTAATGGAAGACCCCGAAACCGATGAAGTTTTTGCCAAGATCCGCCTTGTCCCCATCAAGAAAAATCCAAGTTTCGGTCATTTGTTCGAAGAGGAAACCATGAGGAATGATGATTCCCCAGTTGAAGCAATAACCGTTCCTTTTGTGAAGAGATTAACTCAGTCTGATATAAACAATGAACGCCATTTTACGGTGCCTAGGCAATGTGCAGAAACAATATTTCCAGGGTTGGATTACGAAAAAGAGCCACATGTTCAGTACATAACCTTCACAGATGTGCATGGAGGGATATGGAGTTTTAAACATGGATACAGAGGGACTCCTAAACGACATTTGTTGACTACAGGCTGGAGCACGTTTGTGAAGCAGAAGAAGCTTGTGGCAGGGGATTCAATTGTGTTTATGAAGAAGGAGAGTAATGGAGAGATTCATGTAGGCATCAGGAGAATGAAGGGAGGACATGATCATCATCGCTGGACTCCTCCATCTTCCTGTAATTCTAGGATGAGTTTTCAAGATAGTAATAAGAATAATATGTTGAGTAAGATAAGCAGTAGGAGGATAAGGATGGAGTCAGTGATGGAGGCGATGAGGCAGGCATGGAGTGGGCAGACATTTGAGGTAGAGTACTATCCAAGGGCAAGCACACCTGTATACTGTGTGAATGCATCACTGGTGAGAAAGGCAACAATGGCACCGTGGTGCCTTGGAATGAAAATCAAAATGGCAGTCGAGTCCGATGATCATCCGAAGACATGGTTCATGGGAACTATTAGTGGTGTTGATCAGGGTGGCGAGGAGCAGACTCAATGGGAAAAAAAGTTGCTATGGAGACGACTTGAGGTGAGATAGGAAAATGATGCAATTGGCGTTCTAAAAGATGTGAAGAGAGTGAATCCGTGGCTAATAGAACGAGCTTCAGCCCTGACCATTCCTCTTCCAGCTTCACAATTAGCCCCTCATCCACCCTATAAAAAGCAATGCTTGACGCAGTTCCCATCTACTAATCAGGATTATCTATCTTCTACTACTCCTCTTTCTCCTTTGATCTCGAGCACCCACCGACTTAAGCTGCCACTACCACAACCACTACCACTTCCTTACTCCAATACAGTCTCAGGCATACAGGGATTCAGGTGCCATAACGATGACAAATCGATGCATTACTCTTCTCCCCGAAATTTTCATATAGGCAGTAAGTTGATCACTACGAATAAACCTAACCCCAATTTTCCTTTTGAGGATAATGAAGTTGGTAAGAGTGATATAACTTGCATTGAAACAGCTGAAGTTGGTCATTGTGCAGCTACTGCTTCAAATAACTCATGTGATGACGCAACTTACAAATCAATGGTGACGGATGAGCAAGAGGAGCAGCAAAATTCTGATGTTAGTACTTCTGGGAACGATGTAAAATATGATATATGA

Functional annotation

Database	accession number	e-value	annotation
nr	PHT35149.1	1.7e-71	Auxin response factor 10
Swissprot	Q93YR9.1	1.1e-67	Auxin response factor 16
trEMBL	A0A2G2VQ94	1.2e-71	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	44.39	1e-85	313	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03955	AT4G30080.1	419	193	12	21	408	9	418	44.39	1e-85	313
AfisC6G03955	AT2G28350.1	455	194	13	24	427	3	438	41.98	1e-78	291
AfisC6G03955	AT1G77850.1	355	192	10	28	370	16	356	38.59	8e-62	234

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	137	238	72.7	1.6e-20
PF06507.10	Auxin_resp	Family	286	369	65.3	3.8e-18

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009653	P	anatomical structure morphogenesis
GO:0009555	P	pollen development
GO:0009733	P	response to auxin
GO:0009755	P	hormone-mediated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0010467	P	gene expression
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0044763	P	single-organism cellular process
GO:0045229	P	external encapsulating structure organization
GO:0048364	P	root development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048827	P	phyllome development
GO:0080090	P	regulation of primary metabolic process
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network