result

Gene information

Detail information of AfisC6G03957

Location

Gene	Chr	Start	End	Strand
AfisC6G03957	chr6	709022389	709024134	+

Sequences

CDS

>AfisC6G03957
ATGGGGGACGAATTCCCTAATCCAGAACATCAAGTATTTGGCTATGAAGTTTCAAAAGCAAAAGGGCCAGAAGAAAAGTGTGTAGACTCAAAGTTATGGCAGGCTTGCGCTGGAAGTATGGTGAAAATACCAGCAGTCGAGTCCTTGGTGTACTACTTCCCCCAAGGTCATGCAGAACATGCTCAATGTTCCCTTGACGATAATCTTCTGAACCTGATGAATAAACCACCTTTTTCTCATGTGCTTTGCCGTGTGAATTCTTTAAAGTTAATGGCAGACCCCGAAACTGATGAAGTTTTTGCCAAGATCCGCCTTGTCCCCATCAAGAAAAATCCAAGTTTCGGTCATTTGTTCGAAGAGGAAACCATGAGGAATGATGATTCCCCAGTTGGAGCAGTAACCGTTCCTTTTGTGAAGAGATTAACTCATTCTGATATAAACAACGAACGCCGTTTTACGGTGCCTGGGCAATGCGCAGAAACAATATTTCCAGGGTTGGATCATGGAAAAGAGCCACCTGTTCAGTACATAACTTGCACAGATGTGCATGGAGGGATGTGGAGTTTTAAACATGCATACAGAGGGACTCCTAAACGACATCTGTTGACTACAGGCTGGAGCACGTTTGTGAAGCAGAAGAAGCTTGTGGCAGGGGATTCAATTGTGTTTATGAAGAAGGAGAGTAATGGAGAGATTCATGTAGGCATCAGGAGAATGAAGGGAGGACATGATCATCATCGCTGGACTCCTCCGTCTTCCTGTAATTCTAGGATGAGTTTTCAAGATAGTAATAATAATAATATGTTGAGTAAGATAAGCAGTAGGAGGATAAGAATGGAGTCGGTGATGGAGGCGATGAGGCAGGCATGGAGTGGGCAGACATTTGAGGTAGAGTACTATCCAAGGGCAGGCACACCTGCATACTGTGTGAATGCATCACTGGTGAGAAAGGCAACAGTGGCACCATGGTGTCTTGGAATGAAAATCAAAATGGCAGTCGAGTCCGATGATCATCCGAAGACATGGTTCACGGGAACTATTAGTGGTGTTGATCAGGGTGGCGAGGAGCAGACTCAATGGGAAAAAAAGTTGCTATGGAGACGACTTGAGGTGAAATGGGAAAATGATGCAAGTGGCGTTCTAAAAGATGTGAAGAGAGTGAACCCGTGGCTAATAGAACGAGTTTCAGCCCTGACCATTCCTCTTCCAGCCTCACAATTAACCCCGCATCCACCTTATAAAAAGCAATGCTTGACGCAGTTCCCATCTACTAATCAGGATTATCTATCTTCTGCTCCTTCTCTTTCTCCTTTGATCTCGACCACCCACCAACTTAAGCTGCCACTACCACAACAACTACCACTTCCTTACTCCAGTACAGTCTCAGGCATACAGGGATCCAGGCGCCATAACGAAGACAAATCAATGCATAACTCTTCTCCCCAAAATTTTCATATAGGCAGTAAGTTGATCACTACGAGTAAACCTAACCCCAATTTTCCTTTTAAGGATAATGAAGTCGGTAAGAGTGATATAACTTGCATCGAAACAGCTGGAGTTGGTCATCGTGCAGCTACTGCTACAAATAACTCATGTGATGACGCAACTTACAGATCAATTTCTACTTCTATTCCTAGCAATGATGTCTTTATACTATCTGGAAAGACAATGGTGATGGATGAGCAAGAGGAGCAGCAAAATTCTGATGTTAGTACTTCTGGGAATGATGTAAAATATAATATATGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259738.1	3.3e-95	auxin response factor 18-like isoform X2
Swissprot	Q93YR9.1	1.8e-90	Auxin response factor 16
trEMBL	A0A5P1EYY5	2.4e-95	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	44.61	4e-95	345	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03957	AT4G30080.1	482	225	17	21	485	9	465	44.61	4e-95	345
AfisC6G03957	AT2G28350.1	427	181	12	24	420	3	404	44.73	3e-85	313
AfisC6G03957	AT1G77850.1	459	245	16	28	471	16	448	37.69	8e-72	268

Ortholog group

Species	Genes
Allium cepa	g385041.t1
Allium fistulosum	AfisC6G03957
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	137	238	72.3	2.1e-20
PF06507.10	Auxin_resp	Family	286	369	64.4	7.4e-18

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009555	P	pollen development
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009743	P	response to carbohydrate
GO:0010154	P	fruit development
GO:0010467	P	gene expression
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0045229	P	external encapsulating structure organization
GO:0048366	P	leaf development
GO:0048441	P	petal development
GO:0048442	P	sepal development
GO:0048589	P	developmental growth
GO:0048829	P	root cap development
GO:0051301	P	cell division

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network