result

Gene information

Detail information of AfisC6G04104

Location

Gene	Chr	Start	End	Strand
AfisC6G04104	chr6	733678612	733680156	+

Sequences

CDS

>AfisC6G04104
ATGGAAACAAAGTTGTGTTTGAATAGCAGCAGCAGCCGTAGAGGTGATGAAGTCGTACCTGAACAAGATGTAAAACATATCATTGGAAGAATGAACTATCCTGCAGAAGAACATGTGGTAGACACCGAGTTATGGCACGCTTGCTCGGGAAAGACGGTGAAACTACCAGCAATCAACTCTATAGTATACTACTTTCCTGAAGGTCATGCAGAACACGCACAATATCCTCTTGATAATCTTCTTCAGACGATGAATGCACCTCCTCCTCCTCATGTGCTTTGCCGTGTAGTTTCTCAAAAGCTCATGGCCGACCCAGAAAGTGATGAGGTTTTTGTCAAAATTGGTCTCGTCCCCATGAAACAAAATCCTGAATTTGATCGTTCAAGAGAAGTAAAAAACATGAAGGATGGTTATCCAATAAAGGAGGAAGTAGTCGAAAAGCCGGTGACATTCACAAAGACTTTGACTCCGTCTGATGCAGACAACTCAAGCAGCTTTACAGTGCCTAGGCAATGTGCAGTCAAAATACTTCCAAAGCTCAATTACGAGGAAAAGCCACCGGTTCAGCTCATATGTTGCAGGGATGTGCATGGAAATAAATGGAGTTTCAGACATGTGTTCAGGGGGTCGCCTAAGCGTCATTTATTAAATGGAGGATGGAGCAGATTCGTGGATAGTAAGAAGCTTGTGGCCGGGGACGTTATTGTATTTTTGAAGAAGGAGAGCGGGGAGGTTCATGTGGGTATAAGGAGGTCGATGAAGGAAGGGGCCAAGCTTAAGAGTGGATTAAGGATAAGGAAGGAGGCGGTGATAGAAAGCATAAGGAAGGCATGTGGAGGAGAGGCATTTGAAATAGAGTACTATCCAAGGACTGCAGGCAGCACGCCCGAATACTGGGTGAAGGCATCATTGGTGAGAGAGGCAACAATGATAGCATGGTACCCTGGAATGAGGTTCAAAATGGCTGTTGAGTCGGAGGATCAGCTGAGGGTTGAATGGTTCATGGGAACAGTAGTACTAGTAAAGAACCAATGGTGGAAAAAGTCGCTATGGAGACAGCTTGAGGTGACATGGGATAATGCAACAGGAAGCAGACAGCTTGAAGATGTGAAGCGAGTCAACATGTGGATGGTCGAACCTGTTTCAACCATATTGCCCATGCTGCCTGATCCTGATCATCTGCTTCTCTCTCCTCCGGCTAAAAAGATTTGCTTGTCTCCTTATGATTTTTTATCCAATTCTGTATGTCCTCCTTTGAATACCTCCACTACTGGCCACCTACTTCGGTTGCCTCTACCACAACAACTTCCTCTTTGCTCTCTAGGCATACAGGGATCCAGGCATAATGATCATCACTCTCCAAATTTTCATTTTAAGGATGACGATGCTGGTAAGAATGATGTAGCTTGTGTTCTAACTCTTGGCCAATATGCTCATGCGCCTGCAGCTTCTCCTCCTACTGCTGCTGCTGCAAACATGGAATCCACATCTACATCTGCTACGTTTAGGCTGTTTGGCGAGACAATATATGGTCGTCAAGACTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	OMO91856.1	1.6e-90	AUX/IAA protein
Swissprot	Q93YR9.1	9.1e-86	Auxin response factor 16
trEMBL	A0A1R3JAN8	1.2e-90	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	42.83	3e-91	332	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04104	AT4G30080.1	460	201	11	37	452	13	454	42.83	3e-91	332
AfisC6G04104	AT2G28350.1	568	243	18	36	513	3	543	36.62	1e-85	314
AfisC6G04104	AT1G77850.1	464	225	13	40	455	16	453	35.56	1e-71	268

Ortholog group

Species	Genes
Allium cepa	g181190.t1; g181226.t1; g181239.t1; g181244.t1; g181247.t1; g208584.t1; g403994.t1
Allium fistulosum	AfisC6G04104
Allium sativum	Asa8G02969.1; Asa8G02990.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	151	252	73.2	1.1e-20
PF06507.10	Auxin_resp	Family	280	354	58.8	4.1e-16

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009555	P	pollen development
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009743	P	response to carbohydrate
GO:0010154	P	fruit development
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0045229	P	external encapsulating structure organization
GO:0048366	P	leaf development
GO:0048441	P	petal development
GO:0048442	P	sepal development
GO:0048589	P	developmental growth
GO:0048829	P	root cap development
GO:0051301	P	cell division

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network