result

Gene information

Detail information of AfisC6G04235

Location

Gene	Chr	Start	End	Strand
AfisC6G04235	chr6	757386618	757388673	+

Sequences

CDS

>AfisC6G04235
ATGCCGAGCTCTCATAGCAAAATTTCTGGAAACATTGCTAGAAAAACTTTACCTAAATCGCCATATATCCAAAACTCTATCCTGAAAGTCCGTAAAATTCGCATTATTTATGATGACCCGGACTTGACTGATGATTCAAGTTGTGAAGAGGACAATAGAAATCTGTTTAATCCAGATCAATACCGCAAACGAGCTGTTCATGAAATCTTTATCAACTCTTCCCCTCCTCTCTCCCAGAAATCGAAGAGCTCGAAAAAACAGAAAAGCCCTAAAACCCCTCTGAAATCTGAACCTAGCGAGAAAAGCATACCCGCATCCACACCTGCATCCAAATACAGAGGGGTTCGCCAGCGCAAATGGGGCAAATTCGCTGCAGAGATCCGTGACCCGATACGAGGAATCAGGCAATGGCTTGGCACATTTGATACTGCAGAAGAGGCAGCAGAAGCTTACACTGCTGCTTCTAGAAGACTCCAAGAGGAAAAACAGGCTTTGGAAGCTTCTAAAGGGCACATTGCAAAATCTAAGAAGGTCAAAGCAGTGAAACAACCAATGGAAGCTTCTGAAGCTCCCATTACAAAATCCACCAAGCCCAAAGCACAAAAACAAGTTTCTAAAGCTTCTAATGGCTACATAGCAAATCCTAACAAGTCCATGGGTTCTAATGCATCTTCAGTTGCTGAAACTACTGTTTCATTGTCCTCTGCTGAAATAAGCAGCCACATTGAGGTAGACAAGAAGGATGATAATAAAAAGTCCACTGATATGGAACTGGTGGTAGATGAAAAGATGGCAGTTGGTAATGAGATGGAAATAGAGGCTGAGCCATCAATTGCTGATCTTTTTATAGAGAGAAACATAACCATACCCGATTCCGTTTTTGAATTTGGCAGTTTACCTATGCCTAGTATGGAGTTTGGGTTTGAAACTGATGATTTCTTGATGGGTGGTTTGAATGATTATACCAGTTTGGGCAATGATTTTGCTGGATTGGATGAGTTATCGTCGTGGGAACCAGATTTTGATGAATGCGAATTTCCACTCCCAGAGTTTGAGAAATCGCAGCAAATTTTTGCAGCTTAG

Protein

Gene

>AfisC6G04235
GTCAAAAAGAGAAAGAGAGGATTAAAGTTTTTTTCAGGAGAAGAAGAAATTTATGTCGTTTGGATTCAACAACATCTTTTATTTGCTCGTAAACAATCAACAAATCTTCTATTTTCAATCGATTGTATCAGTTTTGTTGGCCACTGTTCTTCTGTTCATCTTCTTCTTCTCTTTGAAGACGAACTCGATGCAAGTGAAACCTACAAGGTATATTTTGTTTTTATATTAATTTATGCACCGGATCTGTTGTTTTTTAGGTTCATATTACATTCGAGGAGCGAAATAGGTTTTTCCTCGTTTTTTAGGTTTTAGAATCAGGCTTTAGCTATTTGATTTGATTAAATGCTGTTTTTTTGACGTTATAGTGGGGATATCATAGCAGATCTAAGAAAACTAATTGGATTTTAGGTCATTAATTTAAGGAAAAAAATAGTTTTTTCTTATATGTTGTGCTATCTGCTCTTCCTGATTAATTCATGTAATTTGTTACAGGCCTGGATTTGGTGTAAAATACTCTGGATTTCTTCATATACAACGTTGCTTCTACTTTCGAACTCCTCTCACTTGACAAAGTAGCCCTTTAAATCCTCAAAATTTCAATTTTGTTAGTTGTTTTAGCTTACCTTTCAGCATCATGCCGAGCTCTCATAGCAAAATTTCTGGAAACATTGCTAGAAAAACTTTACCTAAATCGCCATATATCCAAAACTCTATCCTGAAAGTCCGTAAAATTCGCATTATTTATGATGACCCGGACTTGACTGATGATTCAAGTTGTGAAGAGGACAATAGAAATCTGTTTAATCCAGATCAATACCGCAAACGAGCTGTTCATGAAATCTTTATCAACTCTTCCCCTCCTCTCTCCCAGAAATCGAAGAGCTCGAAAAAACAGAAAAGCCCTAAAACCCCTCTGAAATCTGAACCTAGCGAGAAAAGCATACCCGCATCCACACCTGCATCCAAATACAGAGGGGTTCGCCAGCGCAAATGGGGCAAATTCGCTGCAGAGATCCGTGACCCGATACGAGGAATCAGGCAATGGCTTGGCACATTTGATACTGCAGAAGAGGCAGCAGAAGCTTACACTGCTGCTTCTAGAAGACTCCAAGAGGAAAAACAGGCTTTGGAAGCTTCTAAAGGGCACATTGCAAAATCTAAGAAGGTCAAAGCAGTGAAACAACCAATGGAAGCTTCTGAAGCTCCCATTACAAAATCCACCAAGCCCAAAGCACAAAAACAAGTTTCTAAAGCTTCTAATGGCTACATAGCAAATCCTAACAAGTCCATGGGTTCTAATGCATCTTCAGTTGCTGAAACTACTGTTTCATTGTCCTCTGCTGAAATAAGCAGCCACATTGAGGTAGACAAGAAGGATGATAATAAAAAGTCCACTGATATGGAACTGGTGGTAGATGAAAAGATGGCAGTTGGTAATGAGATGGAAATAGAGGCTGAGCCATCAATTGCTGATCTTTTTATAGAGAGAAACATAACCATACCCGATTCCGTTTTTGAATTTGGCAGTTTACCTATGCCTAGTATGGAGTTTGGGTTTGAAACTGATGATTTCTTGATGGGTGGTTTGAATGATTATACCAGTTTGGGCAATGATTTTGCTGGATTGGATGAGTTATCGTCGTGGGAACCAGATTTTGATGAATGCGAATTTCCACTCCCAGAGTTTGAGAAATCGCAGCAAATTTTTGCAGCTTAGTTAGATTTTTTTTGTTATCTTGCACTTACAAGTTAATATATTATAATAAGTATTTAAATGTTATTATCTATGCTGAAGAGGCTTATGAGTGTTTCATGTTGAAGAAGAGAAGATCATCTTGGGTTTTTTCCAGAAGCTGAGTTAGAGCTGCTGCCCAAGGGTTTTGTGTGGGTTTTCTCTTAAAATGTAACGAGCGCCTCTTCCGAATTTTTCATTTATTTTATTTATGAGATACTACTAAGAGTGAGTATTTTAGTGTTAAGTTGTCAACTGTTGTTAATCTTCGCATGTGGTTGTTTTAAAGCATATTTAATGTCATATAAATGCTATTTCAGTTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010921469.1	9.0e-27	ethylene-responsive transcription factor ERF073
Swissprot	Q9CA27.1	1.9e-18	Ethylene-responsive transcription factor ERF118
trEMBL	A0A8K0IBW6	2.2e-27	Ethylene-responsive transcription factor ERF073

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68550.1	37.50	1e-19	94.4	CRF10	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04235	AT1G68550.2	200	106	8	30	229	36	216	37.50	1e-19	94.4
AfisC6G04235	AT1G68550.1	200	106	8	30	229	36	216	37.50	1e-19	94.4
AfisC6G04235	AT4G23750.2	137	78	2	29	159	33	169	38.69	5e-18	89.0

Ortholog group

Species	Genes
Allium cepa	g93924.t1
Allium fistulosum	AfisC6G04235
Allium sativum	Asa8G02873.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	110	158	39.7	4e-10

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006970	P	response to osmotic stress
GO:0042802	F	identical protein binding
GO:0009749	P	response to glucose
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0034059	P	response to anoxia
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048825	P	cotyledon development
GO:0070483	P	detection of hypoxia
GO:0071456	P	cellular response to hypoxia

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network