result

Gene information

Detail information of AfisC6G04279

Location

Gene	Chr	Start	End	Strand
AfisC6G04279	chr6	764231631	764233789	+

Sequences

CDS

Protein

Gene

>AfisC6G04279
CTTTATATCCGGATCCAGAACTAAAATCACAACATACATTAAAATAAAGAAAGTCAGCGCTAGCTTTACATTTTCTTCAATCCATGGCAATATGGTGGTCTTCTTCTTTATCAACAATGGATGATGAATACCAAAACAACTGGGATTTGAATGCAGTTGTTAGAGGCTGCAGCAAGACCAACTACACAAGTTATTGCACTTCAGACTTGTTTCAAAATGACGTTGATGTTGAATTCTCAATGAACGGTGAAGACAATAGTGAAGATGTTTCGTTTCTCAATGATCTTGAAGCCATGAAGATCAATGAAATATATGATGAGTTGGATGAGCTGTGCAAGCCTTTCTTTTTGAAACCTGAACAGGAGCAGCAGATCACAAAGCCTTGCAATCGATTAGATTCTCAGAGCACGCCACGATCTAGAAAACGGTAGGTTTGATCATGATGTTTGAGTTGTTAAAATTCAAGAGCTTTTTTGCTTCTGTTTACTACTTTATTCATAAACTGTATTTATGCTTACTTTATTGATTTTTAATGGTGCAGGAAGAATCAGCAAAAGAAGGAGGTTTGCCAGGTTCCAGTAGATGAAGGTGGTGTCGCCTCCGATAAGTGGGCATGGCGTAAATATGGGCAAAAACCAATCAAAGGTTCTCCTTACCCTAGGTGTGTGCATTTGGCTTTATTTATTTATCGTGTTTAGATTTATTTATTTAGTTTTAACATCAGATATATCTGATACTGTCTATGAATTTCTAGAGAAACCATGTAAGGTTGAAAAAAGGTTAATTAATACTTAATACTCTACTTCTTTATCTTACTTCTTAAAGCTTGTTTGTTGAAGTTAATTTTGATTTTCTTAGCCAACTCAGATTTAGATCATCTATTTGATAAATATCTAAACTTGAGAAGATAAACCTAGGTTGAGACTATAGCAATAGGGTCCCAATAATTGTAGCATTACACCAAGTACAATTTATACTGATGAGATTAATGTAATGAAAAATGACAGGGGATATTATAGGTGCAGCAGCTCGAAAGCATGCCTAGCCCGAAAGCAAGTAGAGCGTAGCTACACAGACCCGACAATGCTTACAATAACATACACGGGAGAGCACAACCATCCAGAGCCTGCACATAGAAACTCTTTAGCTGGTACCACGCGTACTAAATTCAAAACCAACCTTGATCGGAGTTCCATTTCCGACAACTCTAACTCCAGTAACTCTGCTTCTACTGATCAAGATGTCATGGCATGTTTTGACTGCAGATGACGTGTAGTTTGCAAAATTACAGTATGCGTTTTGTTTTGTTGGTAACCAAGGAATACCTTGACATACACTAGGGAGAAATCCATTGCAACCGGTAGTAGTTTCTGTGTGAATCAAGCTATGTAATTTATTTCTTTTAGCTATAGAAGTATACAGTCTTATGGATACAAATATCTTATTGTAAACAAATAAAATGAAACTGGAGATTTTTTATTTTTTATCATTGTAGAAAAGTTTATTCATGCATACACGGATTCTAGCCATCCTTATTTTGACCGATAGCAAATTAGTAATTTACATAGACATTTGTTATTGCAACTATAGGTGAAAAGAGTTTTTGAGTAAAAAGGAAAACTCGTAGAAGTCAAATGAGATATCATACTTGGTGTCTCTTTCGACATTGTGATGCAGCAAAGGAAAGTGGAGCCCAGGATTCCGCAGCTCTTCGAAGAATTTTGATGGCAAATGCAAAAGTGAGAGAACTGGAAGTTTGAAAGTTGAAGCAAAATTTTGTGAGAAGGCTAGCTCTATATAAATCCTTTTCTTCTCTCCATTATACTCATTTCACCATTAAAATTTAAAAAGAGAAACTGGAACAAAGCTGAAGCAAAGTAAAGATTGCCAACACTCAAAATGAGTGGAACACAGCCAAAACCAAGAAAGGCGCATATTAGGCGGAGAGGACTAGGACTAAGGTGCTCGGCAACGTGGATCAATCTACGTCAATTAAATTGGTGACTATTTCTCGCTTTAATGCTCTTAGCCATGTATTCAGGGTGTTATTTTGATATTATTAATTGAATTATGGCGTACTTATGACGACTTGCTTTTTTTGTTATTTGATAATAATTTGGTATGGATTAGGAAATGACATTGGGACATTTTGATAGTCC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258639.1	4.1e-52	probable WRKY transcription factor 27
Swissprot	O04609.1	5.3e-36	WRKY DNA-binding protein 22
trEMBL	A0A5P1FMD2	3.0e-52	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G01250.1	44.61	3e-41	165	AtWRKY22;WRKY22	WRKY family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04279	AT4G01250.1	204	95	6	18	208	3	201	44.61	3e-41	165
AfisC6G04279	AT5G52830.1	98	25	1	111	208	143	238	72.45	1e-38	156
AfisC6G04279	AT2G34830.1	117	33	3	98	203	168	283	61.54	7e-35	144

Ortholog group

Species	Genes
Allium cepa	g121782.t1
Allium fistulosum	AfisC6G04279
Allium sativum	Asa8G02824.1; Asa8G02825.1
Arabidopsis thaliana	AT4G01250.1
Oryza sativa	LOC_Os02g16540.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	136	193	89.9	8.9e-26

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0007263	P	nitric oxide mediated signal transduction
GO:0009555	P	pollen development
GO:0009626	P	plant-type hypersensitive response
GO:0009739	P	response to gibberellin
GO:0009793	P	embryo development ending in seed dormancy
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0032550	F	purine ribonucleoside binding
GO:0032559	F	adenyl ribonucleotide binding
GO:0043168	F	anion binding
GO:0043565	F	sequence-specific DNA binding
GO:0051607	P	defense response to virus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network