result

Gene information

Detail information of AfisC6G04286

Location

Gene	Chr	Start	End	Strand
AfisC6G04286	chr6	766049898	766051366	+

Sequences

CDS

Protein

Gene

>AfisC6G04286
CTTGATTAGATATTATTAAATCATTTTTATATAAAAACCGATTTATATAAAGAGATGTTAACAAAGTACATAGAAACTGCTCCCAATCTGTCACCACTAATTTTCTTTTCCTGATCCCTTCTTTTATTTCCCCCTATTTATTCTTCGTACGGATCATCCATCAAAACCAAAGTTCACCAGAGATTATGAATTCCAGCAGCAGCGACACCGATAATAACAACGCCGTCAGTCCAACCGCTGACGTGGCATTACATGCGCCTCCTTCGCCTTCTCCTAAACGCAAGTAAGTTCAATTCAATTCTTCAGCTGTTTCGCTGCCAAGCAATTTTAGTCTAAAATCTAAATTTCAACGCAGCCGGAGATCTATCGAAAAGCGAGTGGTATCGATCCCAATCCACGAAGTAGAAGGATCACGCACAAAAGCCGTGAACGAGTGCACGCCTCCATCCGACTCCTGGGCCTGGCGGAAGTACGGACAGAAACCGATCAAGGGATCACCGTATCCAAGGTAAGCTCTAGACCCCCAAACCGGTGCATTTTAGCACTACACACTTAAATTTGCTAACAAGCGCATCCGGTACTGGATCAGAGGCTACTACAGGTGCAGCAGCGCGAAAGGGTGCCCGGCGAGGAAGCAGGTAGAGCGGAGCAGGGTGGACCCCACTATGCTGGTCGTGACCTACACCGCCGAGCACAGCCACTCTTATCCTGCTCCCAAATCGAACCACAACGGCAGCAGCGGTAAAATTGTCAGCGTTGATGTGAAAGAAGAAGCGACTGTTCCAGATCCGGAACCCGTAACCCGAAATTCGCCCGAATCGGTACCCGAACAGGGAGAATCCAAGTTCTCCGACTTGATTGGGGAAGACTCTAAACTGATGGCCGACGAATATTTTTGGGACGTGGGATCCGCATCCTCGACTTCGCCGGAGAACGACACCATGTTATACGGTCCGATATTCTTTGGATCTGCTGGGCTGGCGATCGATGATGAGATATTAAGCGAGTTTAATGACGAAGATGATGCTCTTTTTGCAGGGTTAGGGGAATTGCCGGAGTTTTCTACGGTGTTTAGGAGAATACAGACAACTGTTGTTCATCAATAATTGTGTAATGTGTAAAATTTACTTTTAGAAATGATTTTTAATTTACTGGATAGCTGTAATTTTTTTTTAGGTTTTTTTGGTAATTTTGTTGCATAGAGATCTAGAATTGAATAAAGAAACGAGGGTAATTGAATATTGGTATTATTTTAAGAAATTATGAGATTAGGTGTGGAAGGGGGAAATAATTGGGATTAGGTGGTGGCCGGCTAATTATGTCATTATGTGGCTGTGATTAGCGTTAATTGTTATTGTTATTGTCATTGCATTCATCAGCAATTTCAATTATTGCTTGGTTAATTATTCAGCGGTGGGACCTACTTACGCGTATGTAGCCAAACATGATATATCCAAAAACGAGAAAAT

Functional annotation

Database	accession number	e-value	annotation
nr	AYU71103.1	5.0e-56	transcription factor WRKY65
Swissprot	Q93WV5.1	2.5e-36	WRKY DNA-binding protein 69
trEMBL	A0A5K6WDL3	3.6e-56	Transcription factor WRKY65

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G29280.1	48.31	3e-49	191	ATWRKY65;WRKY65	WRKY DNA-binding protein 65

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04286	AT1G29280.1	236	96	6	27	255	39	255	48.31	3e-49	191
AfisC6G04286	AT3G58710.1	229	97	7	28	247	37	248	46.29	9e-44	173
AfisC6G04286	AT3G58710.2	229	96	8	28	247	37	247	46.29	3e-42	168

Ortholog group

Species	Genes
Allium cepa	g92126.t1
Allium fistulosum	AfisC6G04286
Allium sativum	Asa8G02821.1
Arabidopsis thaliana	AT1G29280.1; AT3G58710.1; AT3G58710.2
Oryza sativa	LOC_Os01g53040.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	65	121	88.7	2.1e-25

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0007263	P	nitric oxide mediated signal transduction
GO:0009555	P	pollen development
GO:0009626	P	plant-type hypersensitive response
GO:0009739	P	response to gibberellin
GO:0009793	P	embryo development ending in seed dormancy
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0051607	P	defense response to virus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network