result

Gene information

Detail information of AfisC6G04398

Location

Gene	Chr	Start	End	Strand
AfisC6G04398	chr6	788782614	788783990	-

Sequences

CDS

Protein

Gene

>AfisC6G04398
TTGGTTCTTCTTCTTCTTCTTCTTTTATCATTTTGTTTGTATTTTCTCTTTCACTTATTCTTACCAAGTAATCAATAATCAATGGGGAGAGCTCCTTGCTGTGACAAGGCTAATGTCAAAAGAGGACCATGGTCTCCTGAAGAAGATGAAATTCTTCGAAATTACATCGAGAGAAACGGTACTGCTGGTAACTGGATAGCTTTACCTCAAAAAGCCGGTATTTTTACATCAACCCAATTCTCATTTTGTTCATTATTTCAATAAAGTCTGTGCTTTTATGATGTTTCGATCGATTTATAGGCAACCATTCCTCAACTTTTTCTCAAAGTCTTCTCCTTGATAATTCCTTCTGTAATCAACTATCGTTCTTTTGCTTGATCGCGCTCAACGATATAGCAACTTTCATATATAGTTCATCCCTAATCCGTTTACTTCATGCTTAAACAATGAAAGTTGGTAACTTTACAGTTAATCATGTGAAATTTGTTCTTTATATTGACATGAATTCACTGTTCTATTGAGATTGGAATATGGTTACAAATGACAATGCTACCCTATTCTTGAAAATATGTTCCAAAAGTTCAATTTTTTACACAAAAATTACTATTTATAACATTTAGGCCTTAAACGCTGTGGAAAAAGCTGCCGCCTGAGGTGGCTTAACTACTTAAGACCAGACATTCGACATGGAAACTTCAGTGAAGAAGAAGACAACATCATTTGTGCCCTCTTCAAAAGCATTGGAAGCAGGTACCTTACCTTCTTATATACATGTACTTTTGTCAGCTATAAATATATAAAACTCATCCTTAACTGCAACATTTATTCACAGGTGGTCAGTTATAGCTTCACATTTACATGGAAGAACCGACAACGACGTGAAAAACTACTGGAATACAAAGCTGAAGAAAAGAATGATAGCTCTTGAATCGTCCCAAGTACAAATTTCTCAGCCAGAGACTGTACTTAATACGGTCGTAAAACCTGAAGAATTCATCAACTGGAGCTTTGAAAACTATGGCACGAGCATGGAGTTTTACACAGAGCCACCTCCATTGATGCCTGTTTCTATGAACTTGTACAAGCAAGAAGCTGCTAATTATTATGCAACTAGTAGTACTACACCTGAAAGCAACTCTGCAGCTTCTTCATCTATTGAGAACTGGTCTGCTACTGATCCTTTTCTCTCCGACTTGGGTTTCGATTCCTACACTGAATTTCTTAACGGTTATCGTCAAGTTGTGTGATTTGTCAACAAATTTGAATGGTTATTTTAGAATTTAGTAATATGTTGTTTGTCTCTTTTAGTTTTTAGATATGTACAAAAAATTGTTGCCTATGGTGAATCTAACTGTTTTTGTTATTTGTTTGTTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264931.1	2.1e-66	transcription factor RAX2-like
Swissprot	Q9SJL7.1	6.6e-57	Protein REGULATOR OF AXILLARY MERISTEMS 2
trEMBL	A0A5P1EX85	5.8e-66	Uncharacterized protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G36890.1	83.19	8e-60	226	ATMYB38;BIT1;MYB38;RAX2	Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04398	AT2G36890.1	119	20	1	119	1	119	83.19	8e-60	226
AfisC6G04398	AT3G49690.1	126	32	1	126	1	126	74.60	2e-57	219
AfisC6G04398	AT5G65790.1	126	33	1	126	1	126	73.81	2e-57	218

Ortholog group

Species	Genes
Allium cepa	g262303.t1
Allium fistulosum	AfisC6G04398
Allium sativum	Asa8G02775.1
Arabidopsis thaliana	AT2G36890.1
Oryza sativa	LOC_Os05g48010.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	62	53.9	1.4e-14
PF00249.28	Myb_DNA-binding	Domain	69	111	46.6	2.5e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008285	P	negative regulation of cell proliferation
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009785	P	blue light signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0035987	P	endodermal cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0045597	P	positive regulation of cell differentiation
GO:0048226	C	Casparian strip
GO:0048658	P	anther wall tapetum development
GO:0051555	P	flavonol biosynthetic process
GO:0052545	P	callose localization
GO:0055046	P	microgametogenesis
GO:2000021	P	regulation of ion homeostasis
GO:2000067	P	regulation of root morphogenesis
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network