result

Gene information

Detail information of AfisC6G04435

Location

Gene	Chr	Start	End	Strand
AfisC6G04435	chr6	798352724	798354722	+

Sequences

CDS

>AfisC6G04435
ATGAACAACAACCACTATCCATCTCTTTCTCCTTCTCCTTCCCCTTCTCCTTCTCCATCTTCATACTTCATCGCCCATCACAAAAAATCACCAATAGCTTTGATTACAATTATCCCTATCGCATCATTATCTCTTTTCGCACTTCTCCTTATCCTCTTCTTATCAATCCTATACAACAAAAGGAGGCATCATCATGCACTAATCGACCCATACGAAAACACATTAAACATAATATCTATTCATCATGCACATTCTCATCCTTTAGCCGACATAGATGCTATCACCGATGGCTTCCATCCGTCTAACATCATTGGTAAAGGTCCAACAAGTACTGTATACAAAGCAACTTGTATCACCGGGGAACTTGTAGCGGTCAAAAGGATTCATTCTTACATTATTTTGAGCAATATTGGAGTGCTAGATTTCTCTTCTAAGCTCAAGTCTTTGTCGTTCATAAATCATCCTAATGTAGCTTCTATAGTTGGGTATTCTGAAGCGCCAGGAGAAAGGATTATAGTTTGCGAATACGTGGGAAGGAGTTTGGAGTCTCGATTGCATGATCATGAAGATGCAAAGAATTTGAGTTGGGGAATTCGGTTGAAGGTTGCCGCATGTGTTGCACGAGGAATCGAGCATTTGCATGAAGGAGTATCTCCTGGCATAGTGCATGGAAGAGTGAAGCCAAGCAACATTCTGATTGATGGAAACTTCAGTGCTAAAGTTTGCGACTACAATTTACTGTTCATAGACCGAAGCAATTACAGAAGAAGCTTCGGTGGGTACATGGACAATGAAGGAAAAGAAGAAGAGAGCAAGGAGAACGATGTCTACGGAGTAGGAGTGGTTTTGTTGGAAATTTTAAGCGGGAGAAAAAGCGAGGGAGGGATGATAGTTGAATGGGCATTGCCACTGGTTAGAATGGGCAGAGTGGATGAAATGTTGGATGCAAGGTTGAATTTTCCAAAGGATGAAATAATGAGTAAGTTGGTTAGAATGGCAAGAGTTGCTTTGGCTTGTGTTGGAAATGGTAGGAAAATCAGACCTTCCATTGTTCAGGTTTCCGCAATTTTAAGTAGCTTGGACAGATAA

Protein

Gene

>AfisC6G04435
TTCCCCCCGTTTAAAATACCATTTCATCATTTTGGAAAACCATTTAATCTAGAAGGGTTTCAGAGAAGTTTTCAACTGGCGTGAATTTCAAAGAATAAATGATAGTAATAGCTTAAGGTTTGGGATTAGATATACCTGAGTTTATGTTCCTATCCCATGTGATTTGGGTTTAAATCTTTGAACATCAGTATACTTGGCAAACAAAACTATAATTTTGTGGATGGTACCGTAATACTTAAGATTTATTTATTTTCTCTATAACGAGATTATACAGATGACGTTGTATCGGCATAATGGGAAAAGCAAAGCCTTTCTTTTAGGTTTCTGAGTTACTGATTAAAGTGGTATCTACAATTTAGCCCGAGTTAGTTTGATGGATACACCCAATCTAACAAAATAAACCAAGACAAGAAAACCTGAGTCATGTTTACCAAAAACTCAACTAACCACATCCTATCTATTTAGTTATACTATTTTCCCACGTCAATTCCATACTAGCTACCTACCTACTTATTTTACTCGTGTTAACAAACTCATAAGCAACAACTAATCAAAATCAACACACTAACGTAGAATATCATCACTTGTTTCTCTCCTAATTCTTCACTACTACATCAAATAAACATGAACAACAACCACTATCCATCTCTTTCTCCTTCTCCTTCCCCTTCTCCTTCTCCATCTTCATACTTCATCGCCCATCACAAAAAATCACCAATAGCTTTGATTACAATTATCCCTATCGCATCATTATCTCTTTTCGCACTTCTCCTTATCCTCTTCTTATCAATCCTATACAACAAAAGGAGGCATCATCATGCACTAATCGACCCATACGAAAACACATTAAACATAATATCTATTCATCATGCACATTCTCATCCTTTAGCCGACATAGATGCTATCACCGATGGCTTCCATCCGTCTAACATCATTGGTAAAGGTCCAACAAGTACTGTATACAAAGCAACTTGTATCACCGGGGAACTTGTAGCGGTCAAAAGGATTCATTCTTACATTATTTTGAGCAATATTGGAGTGCTAGATTTCTCTTCTAAGCTCAAGTCTTTGTCGTTCATAAATCATCCTAATGTAGCTTCTATAGTTGGGTATTCTGAAGCGCCAGGAGAAAGGATTATAGTTTGCGAATACGTGGGAAGGAGTTTGGAGTCTCGATTGCATGATCATGAAGATGCAAAGAATTTGAGTTGGGGAATTCGGTTGAAGGTTGCCGCATGTGTTGCACGAGGAATCGAGCATTTGCATGAAGGAGTATCTCCTGGTATCATAAATTTTCTTTTTCTCTTTCTGCATCATCTTACTTTTATTTTTACACTCAGAAAGAAGCTTTGCTTGTAAATTACGAGGAAACATACATAAAAGCCACAATATCTTATTACCATTCACTTTCTTGTATGCATACATAGTGTGACCTTTTATGAATCATTTGATATGTGAATTATAGGCATAGTGCATGGAAGAGTGAAGCCAAGCAACATTCTGATTGATGGAAACTTCAGTGCTAAAGTTTGCGACTACAATTTACTGTTCATAGACCGAAGCAATTACAGAAGAAGCTTCGGTGGGTACATGGACAATGAAGGAAAAGAAGAAGAGAGCAAGGAGAACGATGTCTACGGAGTAGGAGTGGTTTTGTTGGAAATTTTAAGCGGGAGAAAAAGCGAGGGAGGGATGATAGTTGAATGGGCATTGCCACTGGTTAGAATGGGCAGAGTGGATGAAATGTTGGATGCAAGGTTGAATTTTCCAAAGGATGAAATAATGAGTAAGTTGGTTAGAATGGCAAGAGTTGCTTTGGCTTGTGTTGGAAATGGTAGGAAAATCAGACCTTCCATTGTTCAGGTTTCCGCAATTTTAAGTAGCTTGGACAGATAAAATGAATTGCAACTTGTATGTTTGTATGATATTAGTCATTTTATTGATAAGATAAATACACGATGATTTTATTGGTTTATTTTCAGTTTCGTGATTAATCTCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008798337.1	4.1e-88	serine/threonine-protein kinase-like protein CR4
Swissprot	Q9FIU5.1	1.2e-31	Calcium/calmodulin-regulated receptor-like kinase 1
trEMBL	A0A8B7CG07	1.5e-87	serine/threonine-protein kinase-like protein CR4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G46080.1	50.17	2e-66	249		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04435	AT5G46080.1	287	124	8	85	362	53	329	50.17	2e-66	249
AfisC6G04435	AT3G59420.1	286	156	8	90	357	504	785	37.76	4e-38	155
AfisC6G04435	AT3G09780.1	301	173	7	70	362	491	770	32.89	1e-36	150

Ortholog group

Species	Genes
Allium cepa	g65198.t1
Allium fistulosum	AfisC6G04435
Allium sativum	Asa8G02699.1
Arabidopsis thaliana	AT5G46080.1
Oryza sativa	LOC_Os08g28890.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	99	290	75.8	3e-21

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001101	P	response to acid chemical
GO:0003677	F	DNA binding
GO:0003723	F	RNA binding
GO:0005576	C	extracellular region
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0016491	F	oxidoreductase activity
GO:0006970	P	response to osmotic stress
GO:0006996	P	organelle organization
GO:0046983	F	protein dimerization activity
GO:0007623	P	circadian rhythm
GO:0042802	F	identical protein binding
GO:0010038	P	response to metal ion
GO:0009507	C	chloroplast
GO:0009555	P	pollen development
GO:0009631	P	cold acclimation
GO:0009699	P	phenylpropanoid biosynthetic process
GO:0009741	P	response to brassinosteroid
GO:0009909	P	regulation of flower development
GO:0010008	C	endosome membrane
GO:0010467	P	gene expression
GO:0016070	P	RNA metabolic process
GO:0016116	P	carotenoid metabolic process
GO:0016571	P	histone methylation
GO:0018024	F	histone-lysine N-methyltransferase activity
GO:0032989	P	cellular component morphogenesis
GO:0043067	P	regulation of programmed cell death
GO:0045087	P	innate immune response
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048653	P	anther development
GO:0060255	P	regulation of macromolecule metabolic process
GO:1905393
GO:0090697

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network