result

Gene information

Detail information of AfisC6G04503

Location

Gene	Chr	Start	End	Strand
AfisC6G04503	chr6	811946846	811948150	+

Sequences

CDS

Protein

Gene

>AfisC6G04503
ATGGGTCACACTAAAGCGAAAACTGATTTTGATATGATTTTGGCGGATAACCAAGAAGAAAATGACGAAGGTAGCTCAGGTGGGTCGATTATAGATGGAAGAGGATCAAAGTTAAAGAAAGGACCCTGGACATCTGTAGAAGATGCCATTTTAGTCGATTATGTAAACAAAAATGGTGATGGAAACTGGAATGTTGTACAAAAGCATTCAGGACTTTCTAGATGTTGCAAAAGCTGTCGATTGCGATGGGCTAATCATCTTCGACCAAACCTTAAGAAGGGTCCATTTACCTTAGAAGAAGAAAAGAAAATTATTGAACTTCATGCCAAGATGGGTAATAAATGGGCTCGAATGGCTGCATTTGTAAGTTGATTTCCATCCTTGAGTAGTGACAGTTTTGATTAAAATACGTCCATGCCCTGTTCGATCTTGCAATTGAACAATTATACTATCTTTTATTATTCTTAGGTGTGAGATAAGGGGATAGTAAGGGAATACGATACACAACTCCACCTAGAGTTCTGAATTAGTCCCAAGCAGAAAAACATCTCAATATTATGTATTTTTGCCCAGATATCAACAGATTCTACTTTTTTCATTAAATTGATAGCCTAGACACCATTGACTCACAACCAATGGCTTCCCATAATAATTATAGTTTTTGTGAATTGTTACTGGATCAAAATCATTAAGATTTGTAAACTACACCGCATAACCGGTCCTTTCATTATGAATTTAAAATGTGTGATCTGGTTTCAGAACGTTTACTGTATATGATTTCATCTGGAAGTATGATGATTTGAAGCCAATTGAGTGAACGAAAACTGTCTGCTTCTACTCTTGTTTAGATTTCATAACTGTGTCCTCTGGCATGAAAACACTATCCTTTCCTGGTGGAGTATAAGTTTAGCACTCGATCCGTGTCTTGCATTTGTGTAAATGTGGGCTGCATGTCATACATCAGGGCTTCTTTCAATATAAATGGTTGCTGCTAGTCTTTGCATTGCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTTATATCAAATATAAATGTAACCACTTATGATTAATAAGTAGGCAAAGTGAATGTTTAGTAATTGATTATTTATATAGAAGACCGTGTGCATATCAGTGTGCGTGTGTGTTCCTTTGCATAAATATGCAAGTCTTTTGAAACATAAGAGTTTTAGATTATCACAATTCACGCACTTTTATTTTTCTGCATGTACCAGGACCTTGCAGTAACTGACGTTGCTTGCAGCTCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020253654.1	1.5e-40	transcription factor GAMYB-like
Swissprot	Q0JIC2.1	1.3e-41	OsGAMyb
trEMBL	A0A5P1FM11	1.1e-40	Transcription factor GAMYB

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06100.1	59.84	2e-38	154	ATMYB33;MYB33	myb domain protein 33

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04503	AT5G06100.1	127	45	2	1	127	1	121	59.84	2e-38	154
AfisC6G04503	AT5G06100.3	127	45	2	1	127	1	121	59.84	5e-38	152
AfisC6G04503	AT5G06100.2	127	45	2	1	127	1	121	59.84	5e-38	152

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	40	87	51.6	7.1e-14
PF00249.28	Myb_DNA-binding	Domain	93	120	28.9	8.5e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009860	P	pollen tube growth
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042335	P	cuticle development
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045926	P	negative regulation of growth
GO:0048235	P	pollen sperm cell differentiation
GO:0080086	P	stamen filament development
GO:0080091	P	regulation of raffinose metabolic process
GO:0090406	C	pollen tube

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network