result

Gene information

Detail information of AfisC6G04614

Location

Gene	Chr	Start	End	Strand
AfisC6G04614	chr6	831042232	831043721	+

Sequences

CDS

Protein

Gene

>AfisC6G04614
TTGCAAAAGGATCTAGAAGAGAAAAAAACAATCAAAAGAGTGGAATAAAGCAAGGGATTGAAATTTAAAGATGGGTAGAGCGCCTTGCTGTGATAAGAGTAAAGTGAAGAGAGGCCCATGGTCACAAGAAGAAGATGCAATTCTCAAAACTTACATAGATCAAAATGGAACTGGTGGTAATTGGATTGCTTTGCCTCAAAAAATAGGTATCTTATCATTTTATATTTCTGAAAATCAAGAAATTTATAAACTTCGCTCATAAAACATTAAGAATATGTTCATATGTTTGAATTCATATATTATATTGATATATGGTTAACTAAGTTCGTTAGTTGAATTCTACCTAAGCATCTCATAACCTATTGATAAGTCAAACAAAATAGTGACCTAACCCTAGATACTGATTATAATTTTTCTTAATTTTTATTTAATTTTGGTTAATTATAACTCTACAAGTTCATATTCAACTACGATTATATAGATAAGTAAGCTGTGGTTTGAATATATATTTATTTGTTTTCTTTAAAAAAAATTGTTTTATTAATTATACCCTAAATTATGAAAGTATTGCATAGAAAATAGGTTGAATATAACCATATCCTGGCCAAAATTGCTATGAGTTCATAAGAAAGTATATATCCACCTTAAAATCTCGACGAATAACTGAATACAGGTCTGAGAAGATGTGGGAAAAGCTGTAGACTTCGATGGCTCAACTATTTGAGACCTAACATCAAACACGGCGACTTCTCAGAGGAGGAAGATCGTCGTATCTGTGAACTTTTCGTCAGCATCGGAAGCAGGTATTTGTAGTTTCCTACATGTACCTTTTATAACTCAAAACTGCTTTCACAATATTAGCTAAATATAACCTGAATCACTTCATTAAATATGATTCAGATGGTCGGTAATAGCAGCTCAATTACCAGGAAGAACGGACAACGACATCAAGAACTACTGGAACACGAAGCTCAAGAAAAGATTGCTAGGACCTACTCAATCTCGAAACACACTTTCTGTGAATCAAGGAATACTGCATTCAGAAACCAATCTAATGAACTCAAATGCTATAGATAGAATGCAACTGCAGCTGCAATTCCAAGGTTTAGTGCATAGCCCTTTTTCTTTCTATAACAATCCTGCTTTGTGGCCTAACTCTCACCCACTTGGGAAGTTGAATAATGTTAACTGTAATGATGTTGTTATTAGTTCGAACAATGAACAACCGATAATCGAAAATAGCATTCAAGATGACGGAAATTTGAACATGAAATATAATGAACTCATTGAGCTGAGTAATTATCAAGGAATAGATGAGATTAATGTTGGTAAGGATATGAATGCGAATATGAATTGGTGGGATTTTAATGGATTTGAGGTGAAATCATCATCAAGTTCTGGAGTGTTCCAGGAATCGAGTACCTCTGTTGATATTAATGGCTTTGATCAGGAGTATGTGCTGGATTATGATATGTTAGCTTGAGTGTTGT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267773.1	1.5e-74	transcription factor MYB36-like
Swissprot	Q9FKL2.1	7.2e-69	Myb-related protein 36
trEMBL	A0A5P1EUN3	1.1e-74	Transcription factor MYB36-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57620.1	64.29	7e-71	264	AtMYB36;MYB36	myb domain protein 36

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04614	AT5G57620.1	210	62	4	1	199	1	208	64.29	7e-71	264
AfisC6G04614	AT5G65790.1	118	18	0	1	118	1	118	84.75	3e-59	224
AfisC6G04614	AT3G49690.1	118	22	0	1	118	1	118	81.36	6e-58	221

Ortholog group

Species	Genes
Allium cepa	g412977.t1
Allium fistulosum	AfisC6G04614
Allium sativum	Asa8G02642.1
Arabidopsis thaliana	AT5G57620.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	62	51.1	1e-13
PF00249.28	Myb_DNA-binding	Domain	69	111	46.2	3.3e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008285	P	negative regulation of cell proliferation
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009785	P	blue light signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0035987	P	endodermal cell differentiation
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0045597	P	positive regulation of cell differentiation
GO:0048226	C	Casparian strip
GO:0048658	P	anther wall tapetum development
GO:0052545	P	callose localization
GO:0055046	P	microgametogenesis
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:0080091	P	regulation of raffinose metabolic process
GO:0080167	P	response to karrikin
GO:2000021	P	regulation of ion homeostasis
GO:2000067	P	regulation of root morphogenesis
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network