result

Gene information

Detail information of AfisC6G04768

Location

Gene	Chr	Start	End	Strand
AfisC6G04768	chr6	854608841	854610138	-

Sequences

CDS

Protein

Gene

>AfisC6G04768
TTCTTCTCTCTCTCTCTTATCTACACAACACATACATCCTAAAAATAACAACTACAGAGGCAATAAAAAGAAAGACTAATTAATTAGTCTTAGATTAATATTGAATCTCATATAGTATTCCATCTCTCTTACCACTCAAACGTTCTGATTATGCCCATGGATCCTGCTATCAAATTGTTTGGAAAGACTATTGCTCTCTCTTTCTGTCGTCAACAAGATGATGGTGATAATCAAGATAAGGTATTATTTCTATTAAAATTACAAGGTTGAATCAGTTGATTATGCTTCAGTCCTTTAGTTCGTCTCATAATTAAAATCTTGTATACAATTTCAGTGTTCGTCTCCAAGCCCAGAAGAAAAATCCGAACCAATAAAACCTACAGCAACCGAATTAACAGAAGTGGAATCCTCATCGAACAGAGAAGAGAATCAGCAGAAACCGCAACTGAAGAAGCCCGATAAAATCTTACCGTGCCCGAGATGCAACAGCACGGACACGAAATTCTGCTACTACAACAACTACAACGTGAACCAGCCGCGCCACTTCTGCAAGAACTGCCAGCGGTACTGGACGGCCGGCGGCACCATGCGCAACGTCCCCGTCGGGGCCGGCAGGCGAAAGACCAAAAACGCCCCTCCGCCCCACTACCCGCACGTCACCCTACCCGACCCCGCCCACCCCGCGAAAGGAGGCACCGTCCTCAGTTTCGGGCCGTACCCGTGGGGGCCCACTTACTGGGGCTACGGGCCCGTCCAGTGGGTTTCGTCGCCTGTTGCCATGACTCCTTCCGGGTCGGGTACCAGCACCGTGTGCTCCGGGTCCATTTCGCCTTTGGGAAAGCGTTCGAGAGAAGGGGAGAGCGAGGACGGAAGAGGGAACTTGTGGATGCCGAAGACGTTGAGGATCGACGACCCGGACGAGGCCTCGAAGAGCTCGTATTGGGCCACGATGGGATTTGATAAGTCGGATCGTGGGCTTTTTAAACCGTTTGCCAAGAATTGTACAGAGGACGATGGTAAGAAGTTGGTCTGTTTGAATCCAGCGGCTTTGTCGCGGTCCATTAGTTTTCAAGAAAGGTCGTAGTTGTAGTTGTAGTCATAGTGTTTTGATGAACAAGTTAAGTTTTGTAAATTGGATTGAGGTTTGTAGTTACTTTTTATGTGCATGTACATATATATTGCTGATGATTGAATAGAGAGGACGAATTAATAATGAAATTTTCAAAAGATGTGCTGAAAAATTATGTACAAGTGCTTCAGTTTGATCTCTGCGTGTCAGGGATAACATTCTGTTTTTG

Functional annotation

Database	accession number	e-value	annotation
nr	ATG31845.1	3.7e-145	cycling dof factor 6, partial
Swissprot	Q8W1E3.2	9.4e-45	Dof zinc finger protein DOF5.5
trEMBL	A0A291FGC6	2.7e-145	Cycling dof factor 6 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62430.1	38.39	2e-48	189	CDF1	cycling DOF factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04768	AT5G62430.1	336	102	10	4	278	6	297	38.39	2e-48	189
AfisC6G04768	AT3G47500.1	192	64	5	4	156	7	197	45.83	6e-37	151
AfisC6G04768	AT3G47500.1	116	51	4	182	278	332	447	39.66	2e-10	62.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	73	129	110.0	4e-32

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010214	P	seed coat development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process
GO:1902455	P	negative regulation of stem cell population maintenance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network