result

Gene information

Detail information of AfisC6G05027

Location

Gene	Chr	Start	End	Strand
AfisC6G05027	chr6	892489464	892491318	-

Sequences

CDS

Protein

Gene

>AfisC6G05027
ATGGCATTAGAGGCAGCAACATTTCTAGAAGAAACCTTCAACAGAAGTAGCAATTTTAGATGGAATGAGATGTATACCTATGATACTAGTAACTTAGTTCTTGATTTTGATGATGGTCTTAGCATGGAATTTGTGAATATGGAAGAGAATGCGATTTCAGAAAATAGGAAGGAAGACAAGGTTATTAATGTTGACAAAATGAAGAGGCGACGTGCGAGGAAGAGTTGTAAGAATAAAGAAGAGGTGGAGAATCAAAGGATGACTCATATCATGGTGGAAAGAAACAGGAGAAAGCTCATGAATGAACATCTTGCTGTGCTTCACTCTCTCATGCCACCAGAATATGTGCCAAGGGTATCTACATCGATTTACACATTTTTATTCTTCAAATTCAGAATGGTAACCATAGGATTTTTTCAAAAAAAATAAAAAATAAATAAGGGGTAAAGGATTTCATGGAATCATAATTTATATTTCAGCATTGCTTGCTTTAGAGCTTGATCTGGTTTTCCTTTTCTTTCTTTTTTTTACTTTTTTTCTTATAGATCTTAATGTTTGTGGTCATGCAAACAGCCTCTTCAGTACAAAATAATTTCCTTTCCAAACAAGAATGATGCAAAATATTTGAATCTTTCTGCTTCCTGACAAATATCATGAAAATATTTTTTTTATGTTTGCCAAATAAATTCAAACCATGATAGAAAACCATCAATCATAGTGACACAAGCTCCAAAAATATCACTGTAACCTCAATGTTTGTGTACCTGAAATGGCTAGATTCTCTACAAAGCTTTCACAATGCTTGCTGAATCATTCAATCCTTTGTACGTGAAACCAAATTTCATTGCACAACTGCATTAAAAGGAGTGCTCTCTTGTTGCGTATACTTGTCAACTTGTAGTGATAAATTTATTCGGTTTCCACGTAGTATATGACTCCTACATGAGAATATTAAGTGTATTGTTTAATGTACGAGAAATCAAAAAAGGAAAAAGAAAACAAAATGTAAGCTCACTTATGTAAATTACAAACTTTTCCACTAATAATACTTATTGTATTCATAGGGTGATCAAGCATCCATTGTTGGAGGAGCAGTCAACTTTATAAAAGATCTCGAGCAACAAATTCATACTTTTGAAGCAATAAAAAGAATGAAGCAGATGCAAGAATTTTACCCATCCACGCCAATTCCTGACGCATTTTCTCAACGCAAATCAGTGTGCTCTAGTAACGTGAACACCACAAACATTGCAAATGCTAGCAACAGTGATGCAGTTAAAACTTTAAACAGGAAAAGATCATCGATTGCTAATATTGACATATCCATGGCTGATAGCCATGTTACTCTTAAGATCCTTACTCAGAAATTACCTAAGCAGTTGTATAAGATAGCAGCCAGGCTTCAAAATCTCCAGTTTACAGTGCTTCATCTTACTGTTTGTACAACTGGTGATGAGATGGCTTTGTATTCATTCAGTCTCAAGGTATGCGAAAAATATTTGCCATTGGTTAATTTCAAAGACCAAGTATCTTCTTTTTTTCCTTTTGATAATCAACTCTTTAATTATGTAGTTCAACACTTTAAGTATGAAATTTGGTTAACTCAAACCAAACTTGACTTTCTATTCTTTTCCGACGTACTTTTTATAACAAAAGTTTAACAATTAGTTACTGATATATTTGGAAATAGGTGGAAGATGATTGTCAGTTCAGATCAGCGGATGATATAACAATAGTAGTGACTCGTATGGTCGAGGATATCGCAAAGGAGGCAGGATGTAATTAATGAACAGTTTTATGTAAATATTAATTTGCAATAATTATTAATCAGAACTATCCTTGAGCTTGTTCTTCC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010272971.1	1.2e-50	PREDICTED: transcription factor bHLH96
Swissprot	Q9SK91.2	6.3e-36	bHLH transcription factor bHLH094
trEMBL	A0A1U8B9D6	8.8e-51	transcription factor bHLH96

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G72210.1	43.18	2e-42	169		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05027	AT1G72210.1	220	102	4	75	286	113	317	43.18	2e-42	169
AfisC6G05027	AT1G22490.1	210	109	5	76	285	104	303	43.33	1e-38	156
AfisC6G05027	AT4G01460.1	230	133	4	56	285	84	306	39.13	1e-37	153

Ortholog group

Species	Genes
Allium cepa	g50954.t1
Allium fistulosum	AfisC6G05027
Allium sativum	Asa8G02201.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	85	136	38.9	5.4e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0009913	P	epidermal cell differentiation
GO:0010377	P	guard cell fate commitment
GO:0010444	P	guard mother cell differentiation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045597	P	positive regulation of cell differentiation
GO:0051782	P	negative regulation of cell division
GO:0061086	P	negative regulation of histone H3-K27 methylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network