result

Gene information

Detail information of AfisC6G05094

Location

Gene	Chr	Start	End	Strand
AfisC6G05094	chr6	904794640	904796535	-

Sequences

CDS

Protein

Gene

>AfisC6G05094
ATATTCTCTCCTCCACCTTCTCACACATCACCATTTCTCTATCCCCAATGCACCATCATCCTTCTATACTTATAAACTCGCTTAACCATATCTAAATATAAAAATCAGAAAAACACACACACAAAAAATGGTAGATCGGTGTTGGGATAATAGCAATGTCGTCGTCAACAACAACAGCAACAATATGGTTAATGGAAAAATGGAACAACAGCACAATGCAGTGCCTGCTCCATTTTTGACCAAAACATATCAACTCGTCGACGATCCCGCCACCGATCGCGTCGTCTCGTGGGGCGACGACGGTGTCTCTTCTTTCGTTGTTTGGAAACCGCCTGAGTTCGCCAGAGATTTGCTTCCTAATTATTTCAAGCACAACAATTTCTCTAGCTTCGTTCGTCAGCTTAATACATACGTAAGTTCTTACCATTACTGCTCTTTTTCTTCAGAATATTAACTTATTTCTTGCATGCGTTTTGTTTTAAGATCGATTCTACATTTTTTGACATTATGCATTGCTTAGCTAATGAAAAAATGTTAGTTTTTTTAGGATTATTTGTCCGTTGAAAACGATAAAAGAGTACATGTATAGCCTTGGTTAATTAGATTTTCAGTGTTTCTGCAAATTTTAAGCCCTTTTCTTTTTCTTCATGTGTTGTCTGCTTGGTCTGGAAATTTTTGCTATGATTCGGTTATTATGCATTTATGATGCATTAATGCAAATTTTAATGGCAAAATAAGAATAGGTAACAGCAGGAGATATGGCTTATAAGTAAATAATGTAACCGGCATTGTTTGACAAAACTTAAACTTTTCAGTTATTTGTTTTTAAGTTAAAGTAGAAGTAAATTCCTAGTACCTACTCATTTCTAAACCAGCCTTTTTTTTTCAAAAAAATAAGAAGAAGAAGGTTTTTGCCTTATATTCCCTTGAATTTTGGTGAAAATTATTTGAAAGTCACAACTCATTATAGAGCATGTGGTTTCCAAACTAGCTTCTGAATTTTTTTCCATAAGAAGAATTATATACCATTGTGTGGTGAACTGTATATGTTACTCTGACCATTGTCTAAGGTGCTTTTGTTTTGCACGTTACAAAATGTACTTACTGTACGCATACACAAATATATTATTTCAGGGATTCAGGAAAGTAGTGCCTGAAAGATGGGAATTTGCAAACGAGTTCTTCAGAAAAGGCGAAAAACACCTGCTATGTGAAATTCACCGCAGAAAGACACCATCTTCATCGTCGGTCATGTCACCAACTTTCTGTCCAACTCCATCGCCATTGATGCCAATTTATTACCACCAAATGCAAATTCCCAGTACTCAGTCTCCTCGACTCATAGCCCTAAACAACAACAATAACAGCACTAGCAACAGTGCTATAAACAACAACAATATGACGGCTGAATCTTTGCTAGAAGAGAATGGAAGGTTAAGAAGAAACAATGCAGCATTGTTATCGGAGTTGGCTCATATGAGGAAACTGTACAATGACATTATCTACTTTGTTCAGAATCATGTTCAGCCGGTCGCTCCAAGTTCTACCTTTTTGAATGGGCTTTATAGCAATGGTGGTGGTGTGAGGAGGAATTATAATGGAGGGATGAATTCTGCGAGTACTACTTCGAGCAGCTCTCTTACTATTGTTGAGGAGAACAATAACAACAATAATGGGGAGAGTAAGAGTGGGCAGCCTAAGCTGTTTGGGGTGCCTTTGAAGAGAGGTTTGAATTTGGATGATAGTGCTAATGGAGCTTGTTCAACTACTAAGCCTAGGTTGGTTTTGGAGAAGGATGATTTGGGGCTTAATTCATCTTCACCATCTTCTTAGTTTTTTTTTCTTTGTTTCTTTTTAATGATCTTGTAGTCGTGTTAGCTTGATGATGTTGCCTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009380920.1	2.0e-65	PREDICTED: heat stress transcription factor B-4c-like
Swissprot	Q9C635.1	1.1e-55	AtHsf-02
trEMBL	A0A804L048	1.4e-65	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G46264.1	49.14	9e-82	300	AT-HSFB4;HSFB4;SCZ	heat shock transcription factor B4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05094	AT1G46264.1	350	129	9	7	321	6	341	49.14	9e-82	300
AfisC6G05094	AT5G62020.1	302	133	10	20	307	9	273	39.07	2e-45	179
AfisC6G05094	AT4G36990.1	198	95	3	29	226	8	193	45.96	7e-43	171

Ortholog group

Species	Genes
Allium cepa	g278467.t1
Allium fistulosum	AfisC6G05094
Allium sativum	Asa8G02160.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	36	126	105.9	1.2e-30

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0042802	F	identical protein binding
GO:0010200	P	response to chitin
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network