result

Gene information

Detail information of AfisC6G05107

Location

Gene	Chr	Start	End	Strand
AfisC6G05107	chr6	906590930	906593682	+

Sequences

CDS

Protein

Gene

>AfisC6G05107
CACACTAAAACTGTTAGTCTATAAAAGGTCCTCTACCCTGCCTTTCCCTTTTCCCATTCTCCTCTTCCTCTTCACTTTTCATTTTTTTCCCCTTTTCCATTTCTGCGTGCTTTTCCAAAAGGTAAAATCTTATTTGGGTTTTATTACGAAATGGAGCTTGGATTGAGTTTAGGCCTGGGTAGAAGACAAGAAGACGAAGAAGAAGAGCAATTTGTTAGAACCAACAATGGGAATTTGAATCTTAGTCTTCATCCTTTCGCTTCCTCTTCTAACAACAACAACCCTAAAATCGGATTTCCATGGAGCAATAATTCAAGTAAGCTCTTTATCGGACTGAGATAAAAAAAATTTAATTGAAAGTATCATAAAATTGATTTTTAGATTTTGTATGCAGAGGAATCATCATCGAGGGAGCTAGACATAAACATGACAGTGTCGGAGGCCGAAGGATCTCCGAACAGCAGCGCCGTCTCGTCTTTTCACGTGGATTTGTACTCCGCCGCAGCCGGAGGCGGAACGTCGGCCGTCGGCGAGGGCGAAACAGAGAGAGCTACTAATTCTAGAGGAAGCGACGACGATGAGAATGGAAGCTCGAGGAAAAAGTTGAGATTGTCCAAAGAGCAGAGTGCTTATTTGGAAGAGAGTTTTAAAGAGCACAGTACTCTTAACCCGGTATGTACACCGCGTGTTGTAATGTCTTTGTTTTATGCGAAAATGAAACTATTCCTTTTTTTAATGGATTTGTTTACTAGCAGAGGCAAAAGGTGGCTTTGGCAAAGCAGCTTAATTTGAGGCCAAGACAAGTTGAAGTTTGGTTTCAAAACAGAAGAGCTAGGTAACTTCTTCTAAATCTCCAATATGTGATTATAAGTACTAATTTTATGTTTTGCTAATTATGTTTCTTCCTAAGTTTATTTTGGGAAACATAAAATCTAGGATTTCCAAAATAGTTCATAAAACATTTTTGAAAAAAAAAATAAATCAAAATATCTCGTTGTTTTTTTCTTTAAAATATGTTCTACATATGAATCTCTTAGTTTTAGATGTTTTTAATGTATACATGAAAAGGATATGAAAGGGAGGTCAGTTTTATTGGTAACCAGAAAATTTCTTTCTTGATTCAAGTTTCTTTGACAGATCTTTTGCATCACTACTTTCCACGTTTTCTGATTATTATCATCATTATTATTTGCATGCTTCAGGATTTATTTTCTACTTTATTTACTTTTAAGAATGATACCATAATAATCATTTTAGTTTATTAGTATACAGTAGAAAAAAGTAATGCATTGGGAATAAAATTGGAACTACTCATTAATTGACATGCAAGTTGACTAGTGCTCATTAATCATCTTGACTGATGTTCAGTTATATGCTTTATTGATTTATATGATGCACATTTGTTAATATCCAGAAATATTATACTTATTCCGGTTTAAAATACGGGATTTCTGCACTGACCCAGTTAAGCCTGATATGTGAAACTGTATCTTATGTGGATCCCACTTCTCAGGCTTCACTGCACTTGTACAAAGATCTCGGTTTTCAAATCAGAACATGCATATTAAATCATTTGAATGTCTATTTATTTCATAACATAATCCTGCTAAAAACAATTTAGTATATAGGCAGCCCTTAAAGCCCATGATGGAAATGTCTTAAATACACCTTTATTCTCATAGTTTAAATTATTTTGAAGCTTAGAATATCAAGAAAAATTGTAGTTTTGATTCATTACATCTACCAAGAAGGTGTTTAACATTTTTGAAGATTATATGTACTTTAAAACAGTCAACAGTGCACTTTGGGAGAATCAAAAGGATGTACGTAGACATAGAGAATTAACTAAAGTTATATGAATATACACACCACTCCAAACAAAATTCAATGAGCAATATTTTGAAATTACCGTTTTGAATCAATACATTTACCAAGAAGATCACTGATATATTTTGAACTATACACCACTCTATGCCTATGATTTCGGATTTATGATAAAAAACGGTTGATCTACTGTTTTGAATCCTTTACATTTACCAAGAAGATGTTGATTTATTTTGAAGATGATCAAAATATATGTACATACACACACAGACGTACACGCCCACTCTAAACAAGTTGAATGAATGATAACAGGACAAAACTGAAGCAAACAGAAGTTGACTGCGAATACTTAAAGAGATGTTGTGAGACACTAACTGAAGAAAATCGTCGGTTACAGAAAGAGCTTTCAGAGTTGAGAGCACTGAAAGCTCCTTCGAATCCTTTCTTCAACCACATGCCTGCAACCACTCTCTCTATGTGCCCTTCTTGTGAGAAAACTACAACTACTACTGCAACTAACCACAACATTAGCAATGCTAATGGCAACGGTAATCATAGTAACAAGGTGAATGGAAGCTTTGGATCATTGTTTGCTGCATCGAAGGCTAGATTTTACCCTTTTGCTTCTCGTCCAGCTACTTCTCCTGCTTCTTGAATTGGTATAGGCATATTTTTTGTAGATATATTGCCTTGGTTAGAAGGCTTTTTTAGAAATGGTTAATGTGGGTTAGGGTGGTGTAATTTTGGTGAACTTTTAACATAATTTTGTGTTATGTTTGACTTTGTTTGGTTGTTAGCTTTTAGAACCAAGAGCAAATCAAATAGATTGCTGTTTTATTTTTTGGTTTTGTTACTCTTGATACTTTCGTAATGGTTGGTTTGTCTGTAAATATTATTTGCTTGATTAGCTTGACTATGATACATTTATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020110120.1	1.3e-52	homeobox-leucine zipper protein HOX11
Swissprot	P46665.3	1.7e-49	Homeodomain-leucine zipper protein HAT14
trEMBL	A0A6P5GWU2	9.4e-53	homeobox-leucine zipper protein HOX11

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06710.1	67.82	4e-61	231	HAT14	homeobox from Arabidopsis thaliana

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05107	AT5G06710.1	174	48	4	75	242	136	307	67.82	4e-61	231
AfisC6G05107	AT5G47370.1	262	94	11	2	246	7	252	51.53	8e-55	210
AfisC6G05107	AT3G60390.1	228	66	8	40	236	47	274	57.46	1e-54	209

Ortholog group

Species	Genes
Allium cepa	g198429.t1
Allium fistulosum	AfisC6G05107
Allium sativum	Asa8G02135.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	123	177	56.2	2e-15
PF02183.15	HALZ	Family	179	213	41.1	1.3e-10

Gene Ontology

Accession	Ontology	Name
GO:0000123	C	histone acetyltransferase complex
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0008283	P	cell proliferation
GO:0009506	C	plasmodesma
GO:0009641	P	shade avoidance
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009826	P	unidimensional cell growth
GO:0010015	P	root morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010017	P	red or far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0010321	P	regulation of vegetative phase change
GO:0010484	F	H3 histone acetyltransferase activity
GO:0010582	P	floral meristem determinacy
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016573	P	histone acetylation
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0048467	P	gynoecium development
GO:0080127	P	fruit septum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network