result

Gene information

Detail information of AfisC6G05172

Location

Gene	Chr	Start	End	Strand
AfisC6G05172	chr6	914840976	914844019	+

Sequences

CDS

>AfisC6G05172
ATGCCAGCTATACCACCTCTCATTATTCTCACCCTCCTTTTATCTTTCTCCTCTCTCTCCACCTCCGACCTCTCCGCCGACAGGTCATCTCTCCTCGCCCTCCGCTCCTCCATCGGCCCTTACCTCCCATGGAACCTTTCCACCTCTCCATGCTCATGGCAAGGCATCACTTGCGAATCCAACCGCGTCACCGTTATCCGCCTTCCCGCCTCGAACCTAATTGGAAAAATCCCTCCGTCGATATTCTCCAACCTCTCCTCCCTCCACACCCTCTCGCTCCGCTACAACGCTCTCACCGGCCCTTTCCCCGATTCATTTCCCTCCCAACTCCGTAACCTTTACCTGCATCGAAACAGGTTCTCCGGCCATCTTCCTGGTCCACGTCTAGCTAACTTGACTAACTTAGTCCGGCTGAATTTGGCGGGCAACAGATTTTCCGGTAAGATACCGGATGAGATTAACCTGCTAACTAGATTAGGAACTTTGTACTTGGAAGACAATGACTTCGAAGGGGAAATCCCAGATATGAAAAATCTGGACAGTTTGAGGCAGTTCAACGTTTCGGGTAATGAAAAGCTAAACGGATCTATTCCTCAGAAGGTCAGATCTATGACGAGGGACTCATTTTTGAGCACTGGTCTCTGTGGCTCGCCTCTCGCAAAATGTCCATGGGAGGTGGACCCTTCCTCTCCTTCGAAGGGGAAGAAGGGGCTATCAGGTGGCGCAATTGCCGGCATAGCCATTGCTGCCGTCGTCGCTTTCTTAATTCTACTTTGTTTGATTTTCTTATTATGTAGAAAGAAGGGATCTATGAAAAGCTCGACTAGGTCAGCTGATGTGGCAGTTGCTTCTGTTGAAAAGGCGCCGGACATGGAAATTCCTCTCACAGATAAGAGGGTGGTCGGAGATGGTGCGCCAGTGCCTGCGGTTGTTCCTCCGGTTGCTCCGGTTACAGAAAACGGCGCGAAGAAATTGATATTCTTTGGATCGGGGGTGAAGGTTTATGATTTGGAAGACTTATTGAGGGCATCGGCTGAGGTATTGGGGAAGGGTACATTTGGAACAGCGTATAAAGCTGTGCTTGAAATGGGAGTAACAGTGGCTGTGAAAAGGTTGAAGGAGGTTAACATTACTGATAGAGAGTTTAGAGAGAGGATCAATGTGATTGGGAATATGGAACATGCGAATTTGGTAGGATTAAGAGCTTATTACTTCAGTAAAGAGGAGAGACTGCTTGTCTATGATTACATGAGCATGGGTAGTTTGTCTTCTCTTCTTCATGGCAACAGAGGATCGGGCAGGACCCCACTAAACTGGGAAACCCGCTCCGCAATCGCTCTAGCAGCAGCCAAAGGCATCGAGTACATCCACTCCACATCCCCAACCGCTTCCCACGGCAACATAAAATCGTCAAACGTCCTACTGGACCGGTCCTACGAAGCCAAAGTATCGGATCACGGGCTCAATACTCTCGCTGGCCCATCACCCACTCCAAACCGGGTTGCCGGGTACAAAGCCCCAGAGGTTACCGACGCCCGAAAGGTCTCTCAAAAGGCGGACATCTTCAGCTTCGGCGTCCTCCTCCTTGAACTCCTTACCGGAAAAGCCCCTGCGCAAGCCGCACTGAACGAAGAAGGGGTAGACTTGCCGAGATGGGTACAATCGGTAGTCCAAGAAGAATGGACCTCCGAAGTTTTCGATTTGGAGCTGCTCCGATATCAGAGTGTGGAAGAGGAGATGGTCGAACTATTACAGCTGGCGATCGACTGTGCGGCCCAGTATCCGGACAGAAGGCCCACAATGTCCGAAGTTGTTAAGAGGATTGAAGAAATTCGACAGTCGAGTTTGTTGCCGCCGTCCGATGATAAAGAAGAGGGACCTTGA

Protein

Gene

>AfisC6G05172
CAGCTTTCAAAACCCCCCCTTCTTCCTTTTCTTTTCTCTCTCTTCCTCCTCTGCTTCTCTCATCATCTCCAACAATGCCAGCTATACCACCTCTCATTATTCTCACCCTCCTTTTATCTTTCTCCTCTCTCTCCACCTCCGACCTCTCCGCCGACAGGTCATCTCTCCTCGCCCTCCGCTCCTCCATCGGCCCTTACCTCCCATGGAACCTTTCCACCTCTCCATGCTCATGGCAAGGCATCACTTGCGAATCCAACCGCGTCACCGTTATCCGCCTTCCCGCCTCGAACCTAATTGGAAAAATCCCTCCGTCGATATTCTCCAACCTCTCCTCCCTCCACACCCTCTCGCTCCGCTACAACGCTCTCACCGGCCCTTTCCCCGATTCATTTCCCTCCCAACTCCGTAACCTTTACCTGCATCGAAACAGGTTCTCCGGCCATCTTCCTGGTCCACGTCTAGCTAACTTGACTAACTTAGTCCGGCTGAATTTGGCGGGCAACAGATTTTCCGGTAAGATACCGGATGAGATTAACCTGCTAACTAGATTAGGAACTTTGTACTTGGAAGACAATGACTTCGAAGGGGAAATCCCAGATATGAAAAATCTGGACAGTTTGAGGCAGTTCAACGTTTCGGGTAATGAAAAGCTAAACGGATCTATTCCTCAGAAGGTCAGATCTATGACGAGGGACTCATTTTTGAGCACTGGTCTCTGTGGCTCGCCTCTCGCAAAATGTCCATGGGAGGTGGACCCTTCCTCTCCTTCGAAGGGGAAGAAGGGGCTATCAGGTGGCGCAATTGCCGGCATAGCCATTGCTGCCGTCGTCGCTTTCTTAATTCTACTTTGTTTGATTTTCTTATTATGTAGAAAGAAGGGATCTATGAAAAGCTCGACTAGGTCAGCTGATGTGGCAGTTGCTTCTGTTGAAAAGGCGCCGGACATGGAAATTCCTCTCACAGATAAGAGGGTGGTCGGAGATGGTGCGCCAGTGCCTGCGGTTGTTCCTCCGGTTGCTCCGGTTACAGAAAACGGCGCGAAGAAATTGATATTCTTTGGATCGGGGGTGAAGGTTTATGATTTGGAAGACTTATTGAGGGCATCGGCTGAGGTATTGGGGAAGGGTACATTTGGAACAGCGTATAAAGCTGTGCTTGAAATGGGAGTAACAGTGGCTGTGAAAAGGTTGAAGGAGGTTAACATTACTGATAGAGAGTTTAGAGAGAGGATCAATGTGATTGGGAATATGGAACATGCGAATTTGGTAGGATTAAGAGCTTATTACTTCAGTAAAGAGGAGAGACTGCTTGTCTATGATTACATGAGCATGGGTAGTTTGTCTTCTCTTCTTCATGGTGAGTTTTCAATTTCTACTTTACACCCGTTTACTGCGTTATTTTGCGTCATTGCTGGTTAAGTTTTAGTTATCATCTTATGTTTTGTTAGTTTGAATTCATTCGGTTGAATTAACAACATAAGAAATGAACATTTGATTCAATTTAATTTTTTTTCTTCTTGACGTTGAAATTCCAATGGGAATTCGTGACAAACACAAACTCGCTATCCACGCTAACAAATTTATTGCTTAACCGTTTTATATTCTACTCTTTTATACCATTCATTAATGCATTTCACAATTGTGCACTAGATTGGTTGACATTTCATTCGAATGTACGTCAACGAATGGAAAATTTTCCATGTTTTGATTGGGTGTTGACATATGCTTTCTTAGAAGCAGTCAACTGTTTGGTGTATGTATTCTCATGTATTTTCTTTCTCCAATATTCTTCTCTTCTAATCCGTTTGATTCGATTCTACGTGGTGACTTCATCCATTTGATTTTCACATCCACCGTCATAAAAAGAATTGGTCTCACATTTTACACTGGACATATTCTATGCAAAAACATACCTCCAGCAAGTAGTAGTCCTAAATCCGCGTAACAACACCTTTGAGTTGATCACAACTTTGAATATGTAACTATACGCTTAACTTCTTATTTGGTTCAGTCAATCTTGTTTTAGGCAACTTTCACGTCTCAACACTTCTTTGACATAATGCATTAATAGTAAGGACAAAATTGACATTTTACAGGCAACAGAGGATCGGGCAGGACCCCACTAAACTGGGAAACCCGCTCCGCAATCGCTCTAGCAGCAGCCAAAGGCATCGAGTACATCCACTCCACATCCCCAACCGCTTCCCACGGCAACATAAAATCGTCAAACGTCCTACTGGACCGGTCCTACGAAGCCAAAGTATCGGATCACGGGCTCAATACTCTCGCTGGCCCATCACCCACTCCAAACCGGGTTGCCGGGTACAAAGCCCCAGAGGTTACCGACGCCCGAAAGGTCTCTCAAAAGGCGGACATCTTCAGCTTCGGCGTCCTCCTCCTTGAACTCCTTACCGGAAAAGCCCCTGCGCAAGCCGCACTGAACGAAGAAGGGGTAGACTTGCCGAGATGGGTACAATCGGTAGTCCAAGAAGAATGGACCTCCGAAGTTTTCGATTTGGAGCTGCTCCGATATCAGAGTGTGGAAGAGGAGATGGTCGAACTATTACAGCTGGCGATCGACTGTGCGGCCCAGTATCCGGACAGAAGGCCCACAATGTCCGAAGTTGTTAAGAGGATTGAAGAAATTCGACAGTCGAGTTTGTTGCCGCCGTCCGATGATAAAGAAGAGGGACCTTGATCAGTAATTTGATTTTAATTTATTGTTCTTGTTAGTATACGACATGTGTGCATTTTTTTGCATTTCTTTTTCCTTCTTTTTTTTTCCGTTTCTGAATTTGTGGTGTCATTGTTAGGATTTGAAGATATTGAAGTAAATTCTTTTTATGTTTATTAGTTGGTTGGTTTGAAAATGATGTGGGGTGATGCCAGGCAGAAATTGTATGGGACTTGTGATAACATTAGCTGTATTAGTTTGGTGAGCTAAATTTCTTTTATTACCTTAATTAAACTATTGATTTGTGAATTATATTTTAATTTAATTTGTTATATGCCGACAATAGTTGGAAGGTCCGATACTATGTCATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010926113.1	1.5e-162	probable inactive receptor kinase At1g48480
Swissprot	Q9LP77.1	1.4e-136	Probable inactive receptor kinase At1g48480
trEMBL	A0A6I9RGC9	1.1e-162	probable inactive receptor kinase At1g48480

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G48480.1	54.88	0.0	643	RKL1	receptor-like kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05172	AT1G48480.1	625	238	15	21	612	30	643	54.88	0.0	643
AfisC6G05172	AT3G17840.1	629	234	14	23	614	30	641	54.21	1e-179	626
AfisC6G05172	AT5G16590.1	616	258	13	21	618	22	620	52.44	9e-168	587

Ortholog group

Species	Genes
Allium cepa	g237782.t1
Allium fistulosum	AfisC6G05172
Allium sativum	Asa8G06267.1
Arabidopsis thaliana	AT1G48480.1; AT3G17840.1
Oryza sativa	LOC_Os03g12250.1; LOC_Os03g50450.1; LOC_Os04g38910.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	25	58	29.7	5.2e-07
PF13855.3	LRR_8	Repeat	65	120	30.3	2.3e-07
PF00069.22	Pkinase	Domain	345	606	128.9	2e-37

Gene Ontology

Accession	Ontology	Name
GO:0022625	C	cytosolic large ribosomal subunit
GO:0003729	F	mRNA binding
GO:0004672	F	protein kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005774	C	vacuolar membrane
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009610	P	response to symbiotic fungus
GO:0009737	P	response to abscisic acid
GO:0016310	P	phosphorylation
GO:0040008	P	regulation of growth
GO:0044267	P	cellular protein metabolic process
GO:0044699	P	single-organism process
GO:0050794	P	regulation of cellular process
GO:0071840	P	cellular component organization or biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20359	RABAC1, PRAF1; PRA1 family protein 1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network