result

Gene information

Detail information of AfisC6G05219

Location

Gene	Chr	Start	End	Strand
AfisC6G05219	chr6	921598784	921602490	-

Sequences

CDS

>AfisC6G05219
ATGAACAGATGCAGACCCGCCGCTCGCCAAGAGTGGGTTCCCCGCGGATCCACCTCCGCTTCTGGCGTCCTCCCCAAACCCGACCCTAAACCCGACTCTAAACCCGACCCTAAACCTGATCCTAAATCCGTCAACAACCACCACAACCGCCGCCGTCCGAATCAACACTCTAGACCTAACCCTAACCCTCCCCGCCAGGTGCCTCCGCCGCCAACATCTGATTCAGACGTTCCGCAGCTTGTGCAGGAGATCCAAGAAAAACTCCAGAAAGGGGCTGTGGAGTGCATGATCTGCTACGATATGGTCAGGAGATCGTCGCCGATCTGGTCCTGCTCCAGCTGCTACTCCATCTTCCATCTCCACTGCATCAAGAAATGGTCTCGCTCTCCTAATGCTTCAGAATCTCTCTCATCCACCACCGCCAGCTGGCGCTGCCCTGGATGCCAATCCCCTCAACCCACACCTTCCAATAACTTGAAGTACGTCTGCTTCTGTACCAAAAGAATTGACCCACCTAACGACTTTTACCTAACGCCCCATTCTTGTGGAGAGCCCTGCATGAAAGAATTGGATAAACAGACCGGATGCCCTCATGTTTGTGTTCTACAATGCCATCCTGGCCCCTGCCCTCCTTGCAAGGCTTTTGCACCAAGGCAGCCATGTCCTTGTGGGAAGAAGACGCTTGTAAGAAGGTGTTCTGATAAGAATGCAAGCTTGACATGTGGGCAAAGGTGTGGAAATCTGTTGAGCTGCGGAAGACATAGGTGTGAGAAGCTCTGCCATGTTGGGAGTTGCAGTCCATGTAAAGTTCCGGTAGTTGCTGGATGTTTCTGTGGGAGAAGGAATGAGGTTGTGCTCTGTGGCGACATGATGTTTGAAGGTGAGATTGGAACTGGTAATGGTGTATTCTCTTGTAATGATAAATGCGGAAGGGTTTTGGGATGTGGAAACCATGAATGTTTGGAAAGTTGCCACCCAGGTCCATGTGGGGAGTGCATGTCCTCGGTTGATAAAGTAAAGAAGTGTTGTTGTGGGAAGACGGATTTGAAGGAGAAGAGGACGAGTTGTTTGGATCCGATACCGACTTGTTCGAGTTTGTGTGAGAAGGCTTTGAAATGTGGCGTTCATTTCTGCGCTGAGAAGTGTCACGAGGGAGAGTGTCCCAAGTGTTTGGTGAAAGTTGAGCAGAAATGTAGATGTGGGTCTTCACAAAGGACGATTGAGTGTTATAAAACGGTTGAGGAGGAAGGTGTTTTTGTTTGTGAAAAGGTCTGTGGGAAGAAGAAGAATTGTGGTAGACATAGATGTAGCGAGAAGTGTTGCCCTTTGTCAAGACCGGGTAACGGGCATCATTTAGATGGAGAGTGGGATCCTCATTTGTGCTCAGTGCCATGTGGCAAGAAGCTAAGATGTGGACAACATGCTTGCCAGTTGCTTTGTCATAGTGGGCATTGCCCGCCATGCTTGGAGACGATATTCAATGATCTTTCTTGTGCTTGTGGGAAGACTTCAATTCCTCCACCTCTGCCATGTGGGACCCCTGTGCCTACATGCATGCACCCGTGTTTGATTCCTCAACCATGTGGTCACACTGCTTCCCACACTTGTCATTTTAGCGACTGCCCACCTTGTTCGGTTCCTGTATCAAAAGAATGCATGGGTGGTCATGTTCTGCTGAGGAACATTCCATGTGGGTCAAAGGATATAAGATGCACTCAGCAATGTGGAAAAACCAGACAATGTGGGTTGCATGCATGTGCACGTGTTTGTCATTCACCTCCATGTGATCCTCCTCTTCCTTCAGGGTCAAACTTTGGTTCACGAATATCTTGTGGGCAGATATGTGGTGCACCAAGAAGGGATTGTAAACACACATGCAGAGAAAATTGTCACCCATCGTCTCCTTGTCCTGATACTAGATGTGAATTTATGGTGACGATCACTTGTTCTTGTGGTAGAATCACTGCTAACGTGCAATGTGGGGCGGGAGGTAATGGCAGTGGATTCAATACAGATTCTGCAGCTGAAGTTTCTCGAATTCAGAGTCTACCCGTTCCACTTCTTCCAGTTGAATTGAATGGTAAAAGAGTACCTCTTGGTCAGAGAAAGTTAACGTGTGATGAAGAGTGTGAGAAACTAGCTCGAAAGAAACAGCTTGCTGATGCATTTGAAATCAACACTCCAAACATGGAGTCCTTGCAATTGGGTGAGAATTCTTCTGCTTTGGAGTTGCTTGCAGATATGTTTAGAAGAGAACCTAAATGGGTATCAGCTGTAGAGGAGAGATTCAAATATTTAGTACTTGGAAAAGGTAAAGGGATCACAGCAACCAATCTAAGAGTTCATGTATTCTGCCCAGCATTAAAAGAGAAGAGAGATGCTCTTCGATATCTAGCAGAAAGATGGAAACTTAAAGTACAATCAGCAGGGTGGGAACCGAAGCGATTTCTTGCGGTTCATGTCACACCGAAATCCAAACCACCATTACGGATCATTGGATCCAAACCTGGAGTACCCGTTGCTGCTTTGCACCCTCCAGCCTTTGACCCGTTAATAGATATGGATCCAAGGTTAGTAGTGGCTATGCTCGACTTGCCAGGAGATGCAGATATAAGTGCTTTAGTGTTAAGATTTGGTGGAGAATGTGAATTGCTTTGGTTGAATGATAAGAATGCTTTGGCTGTGTTTAGTGATCCAGCTAGAGCGGCTACTGCATTAAGAAGATTGGACCATGGTACAGTTTATCAAGGAGCAACAGCAGTTTATCAGAATAATAATGCTTCAGGAAGCAATAATAATGTATGGGGAGGTGCAGTTTCTAGTAATGCTAATGCGATAAGCGGTACCCATGCATGGAAAAAAGATTCTTCTTGGGGAGAATCTTCAGCGCCTGTCTGGAAAAAAAATGAGGACTCCTCTTCTACTATTATGGCTTTAGATAATAGATGGAGTGTTCTTAGCACAGATGAAAATAAGCATGCAGCTGTCTCTGAGTCTGTGGAGGGTAGTTCAGACATTCAAGCAGGAGATGGAAGTTCTTCATTGATCCAAGCCACTAATGGAGAAGTTGACAGTTGGGAGGAGGCTTGCGATTGA

Protein

>AfisC6G05219
MNRCRPAARQEWVPRGSTSASGVLPKPDPKPDSKPDPKPDPKSVNNHHNRRRPNQHSRPNPNPPRQVPPPPTSDSDVPQLVQEIQEKLQKGAVECMICYDMVRRSSPIWSCSSCYSIFHLHCIKKWSRSPNASESLSSTTASWRCPGCQSPQPTPSNNLKYVCFCTKRIDPPNDFYLTPHSCGEPCMKELDKQTGCPHVCVLQCHPGPCPPCKAFAPRQPCPCGKKTLVRRCSDKNASLTCGQRCGNLLSCGRHRCEKLCHVGSCSPCKVPVVAGCFCGRRNEVVLCGDMMFEGEIGTGNGVFSCNDKCGRVLGCGNHECLESCHPGPCGECMSSVDKVKKCCCGKTDLKEKRTSCLDPIPTCSSLCEKALKCGVHFCAEKCHEGECPKCLVKVEQKCRCGSSQRTIECYKTVEEEGVFVCEKVCGKKKNCGRHRCSEKCCPLSRPGNGHHLDGEWDPHLCSVPCGKKLRCGQHACQLLCHSGHCPPCLETIFNDLSCACGKTSIPPPLPCGTPVPTCMHPCLIPQPCGHTASHTCHFSDCPPCSVPVSKECMGGHVLLRNIPCGSKDIRCTQQCGKTRQCGLHACARVCHSPPCDPPLPSGSNFGSRISCGQICGAPRRDCKHTCRENCHPSSPCPDTRCEFMVTITCSCGRITANVQCGAGGNGSGFNTDSAAEVSRIQSLPVPLLPVELNGKRVPLGQRKLTCDEECEKLARKKQLADAFEINTPNMESLQLGENSSALELLADMFRREPKWVSAVEERFKYLVLGKGKGITATNLRVHVFCPALKEKRDALRYLAERWKLKVQSAGWEPKRFLAVHVTPKSKPPLRIIGSKPGVPVAALHPPAFDPLIDMDPRLVVAMLDLPGDADISALVLRFGGECELLWLNDKNALAVFSDPARAATALRRLDHGTVYQGATAVYQNNNASGSNNNVWGGAVSSNANAISGTHAWKKDSSWGESSAPVWKKNEDSSSTIMALDNRWSVLSTDENKHAAVSESVEGSSDIQAGDGSSSLIQATNGEVDSWEEACD

Gene

>AfisC6G05219
CTCAAATTTCCTCTTCCCCACGTATCAATCCTGTCCGTCCACTTACATCCAACGGTTGGAACCTCTCCTCCTCCAATCCGCCGTATCTCTAAAAACCGTCTTCCATTTTGCATAAATTCTCTCATTCACATCTCAGGAGTATCTCTCACATCCCCCATTTTCCACCAAGTACCAAATCGAAGAGGCAGTATCCAAAAAATAGATAAATTTTTGTCGGATCGGGTCGGATCCTCAAATCGCGAAACCGCCATGAACAGATGCAGACCCGCCGCTCGCCAAGAGTGGGTTCCCCGCGGATCCACCTCCGCTTCTGGCGTCCTCCCCAAACCCGACCCTAAACCCGACTCTAAACCCGACCCTAAACCTGATCCTAAATCCGTCAACAACCACCACAACCGCCGCCGTCCGAATCAACACTCTAGACCTAACCCTAACCCTCCCCGCCAGGTGCCTCCGCCGCCAACATCTGATTCAGACGTTCCGCAGCTTGTGCAGGAGATCCAAGAAAAACTCCAGAAAGGGGCTGTGGAGTGCATGATCTGCTACGATATGGTCAGGAGATCGTCGCCGATCTGGTCCTGCTCCAGCTGCTACTCCATCTTCCATCTCCACTGCATCAAGAAATGGTCTCGCTCTCCTAATGCTTCAGAATCTCTCTCATCCACCACCGCCAGCTGGCGCTGCCCTGGATGCCAATCCCCTCAACCCACACCTTCCAATAACTTGAAGTACGTCTGCTTCTGTACCAAAAGAATTGACCCACCTAACGACTTTTACCTAACGCCCCATTCTTGTGGAGAGCCCTGCATGAAAGAATTGGATAAACAGACCGGATGCCCTCATGTTTGTGTTCTACAATGCCATCCTGGCCCCTGCCCTCCTTGCAAGGCTTTTGCACCAAGGCAGCCATGTCCTTGTGGGAAGAAGACGCTTGTAAGAAGGTGTTCTGATAAGAATGCAAGCTTGACATGTGGGCAAAGGTGTGGAAATCTGTTGAGCTGCGGAAGACATAGGTGTGAGAAGCTCTGCCATGTTGGGAGTTGCAGTCCATGTAAAGTTCCGGTAGTTGCTGGATGTTTCTGTGGGAGAAGGAATGAGGTTGTGCTCTGTGGCGACATGATGTTTGAAGGTGAGATTGGAACTGGTAATGGTGTATTCTCTTGTAATGATAAATGCGGAAGGGTTTTGGGATGTGGAAACCATGAATGTTTGGAAAGTTGCCACCCAGGTCCATGTGGGGAGTGCATGTCCTCGGTTGATAAAGTAAAGAAGTGTTGTTGTGGGAAGACGGATTTGAAGGAGAAGAGGACGAGTTGTTTGGATCCGATACCGACTTGTTCGAGTTTGTGTGAGAAGGCTTTGAAATGTGGCGTTCATTTCTGCGCTGAGAAGTGTCACGAGGGAGAGTGTCCCAAGTGTTTGGTGAAAGTTGAGCAGAAATGTAGATGTGGGTCTTCACAAAGGACGATTGAGTGTTATAAAACGGTTGAGGAGGAAGGTGTTTTTGTTTGTGAAAAGGTCTGTGGGAAGAAGAAGAATTGTGGTAGACATAGATGTAGCGAGAAGTGTTGCCCTTTGTCAAGACCGGGTAACGGGCATCATTTAGATGGAGAGTGGGATCCTCATTTGTGCTCAGTGCCATGTGGCAAGAAGCTAAGATGTGGACAACATGCTTGCCAGTTGCTTTGTCATAGTGGGCATTGCCCGCCATGCTTGGAGACGATATTCAATGATCTTTCTTGTGCTTGTGGGAAGACTTCAATTCCTCCACCTCTGCCATGTGGGACCCCTGTGCCTACATGCATGCACCCGTGTTTGATTCCTCAACCATGTGGTCACACTGCTTCCCACACTTGTCATTTTAGCGACTGCCCACCTTGTTCGGTTCCTGTATCAAAAGAATGCATGGGTGGTCATGTTCTGCTGAGGAACATTCCATGTGGGTCAAAGGATATAAGATGCACTCAGCAATGTGGAAAAACCAGACAATGTGGGTTGCATGCATGTGCACGTGTTTGTCATTCACCTCCATGTGATCCTCCTCTTCCTTCAGGGTCAAACTTTGGTTCACGAATATCTTGTGGGCAGATATGTGGTGCACCAAGAAGGGATTGTAAACACACATGCAGAGAAAATTGTCACCCATCGTCTCCTTGTCCTGATACTAGATGTGAATTTATGGTGACGATCACTTGTTCTTGTGGTAGAATCACTGCTAACGTGCAATGTGGGGCGGGAGGTAATGGCAGTGGATTCAATACAGATTCTGCAGCTGAAGTTTCTCGAATTCAGAGTCTACCCGTTCCACTTCTTCCAGTTGAATTGAATGGTAAAAGAGTACCTCTTGGTCAGAGAAAGTTAACGTGTGATGAAGAGTGTGAGAAACTAGCTCGAAAGAAACAGCTTGCTGATGCATTTGAAATCAACACTCCAAACATGGAGTCCTTGCAATTGGGTGAGAATTCTTCTGCTTTGGAGTTGCTTGCAGATATGTTTAGAAGAGAACCTAAATGGGTATCAGCTGTAGAGGAGAGATTCAAATATTTAGTACTTGGAAAAGGTAAAGGGATCACAGCAACCAATCTAAGAGTTCATGTATTCTGCCCAGCATTAAAAGAGAAGAGAGATGCTCTTCGATATCTAGCAGAAAGATGGAAACTTAAAGTACAATCAGCAGGGTGGGAACCGAAGCGATTTCTTGCGGTTCATGTCACACCGAAATCCAAACCACCATTACGGATCATTGGATCCAAACCTGGAGTACCCGTTGCTGCTTTGCACCCTCCAGCCTTTGACCCGTTAATAGATATGGATCCAAGGTTAGTAGTGGCTATGCTCGACTTGCCAGGAGATGCAGATATAAGTGCTTTAGTGTTAAGATTTGGTGGAGAATGTGAATTGCTTTGGTTGAATGATAAGAATGCTTTGGCTGTGTTTAGTGATCCAGCTAGAGCGGCTACTGCATTAAGAAGATTGGACCATGGTACAGTTTATCAAGGAGCAACAGCAGTTTATCAGAATAATAATGCTTCAGGAAGCAATAATAATGTATGGGGAGGTGCAGTTTCTAGTAATGCTAATGCGATAAGCGGTACCCATGCATGGAAAAAAGATTCTTCTTGGGGAGAATCTTCAGCGCCTGTCTGGAAAAAAAATGAGGACTCCTCTTCTACTATTATGGCTTTAGATAATAGATGGAGTGTTCTTAGCACAGATGAAAATAAGCATGCAGCTGTCTCTGAGTCTGTGGAGGGTAGTTCAGACATTCAAGCAGGAGATGGAAGTTCTTCATTGATCCAAGCCACTAATGGAGAAGTTGACAGTTGGGAGGAGGCTTGCGATTGAGAACATCTATATGTTTTTGTTCTCTATTGATTGATTAGCTGCACTATCTTCATGATCTATCATGAAGGTGAAAAAAGGAACTTTATATTTTGTTGTAATCCTCTCCTTGCTAAACTTTGTTTTTTGTTGGCAAGAGGTAAAATACTATGTTCATATTATACTATATGGTATTAGATTAGATGTTTCTCAGTGTTTTTACTAAATATATATATCAATTAAAACCCGGTACATGGGGAATTCATTTGTCTTGGCCGATCATATATGCATCAATAAATTGTTCAGTTCATGCAAATACTTTAGGATGGCTAGTCAGATTGTTTTCTCGTCGTTCACATTACACAATGCTGGCTGGGTAATCAAAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008789280.1	0.0e+00	NF-X1-type zinc finger protein NFXL1
Swissprot	Q9SY59.1	1.5e-297	NF-X1-type zinc finger protein NFXL1
trEMBL	A0A8B8ZTZ1	0.0e+00	NF-X1-type zinc finger protein NFXL1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G10170.1	58.98	0.0	1165	ATNFXL1;NFXL1	NF-X-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05219	AT1G10170.1	997	362	16	73	1031	201	1188	58.98	0.0	1165
AfisC6G05219	AT5G05660.1	681	326	25	81	682	70	694	32.31	1e-70	265

Ortholog group

Species	Genes
Allium cepa	g260019.t1
Allium fistulosum	AfisC6G05219
Allium sativum	Asa8G02071.1
Arabidopsis thaliana	AT1G10170.1
Oryza sativa	LOC_Os06g14190.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01422.14	zf-NF-X1	Family	198	213	6.6	7.7
PF01422.14	zf-NF-X1	Family	251	269	25.8	7e-06
PF01422.14	zf-NF-X1	Family	315	332	17.9	0.0021
PF01422.14	zf-NF-X1	Family	373	390	21.8	0.00013
PF01422.14	zf-NF-X1	Family	431	442	6.4	8.5
PF01422.14	zf-NF-X1	Family	471	488	21.6	0.00015
PF01422.14	zf-NF-X1	Family	528	545	7.6	3.5
PF01422.14	zf-NF-X1	Family	581	597	15.0	0.017
PF01422.14	zf-NF-X1	Family	615	641	4.2	41

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078	F	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003729	F	mRNA binding
GO:0042742	P	defense response to bacterium
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0009642	P	response to light intensity
GO:0009651	P	response to salt stress
GO:0009697	P	salicylic acid biosynthetic process
GO:0010188	P	response to microbial phytotoxin
GO:0010310	P	regulation of hydrogen peroxide metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12236	NFX1; transcriptional repressor NF-X1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network