result

Gene information

Detail information of AfisC6G05267

Location

Gene	Chr	Start	End	Strand
AfisC6G05267	chr6	929792590	929795860	-

Sequences

CDS

>AfisC6G05267
ATGTTGCTGGTTGGACTTAAAATAAGCATTTTTGAGAAAACCCATGTGCTAGCTTTTGTAATGAAGTTAATTGATTATTTTCTTGCATCTCCAGTTATACTTCCTAAACAGAGACACAAGGCTTTCTTGAGTTTTAGAGGGAGAAAGACTAAAAGCACAAAACATGAGCTCAGTGACAACGAAAACATTGACAATTCTGATCAAAGCTCGCCACGAGGAGTGTTCGAAACTTCAGTATCAAGCACCGATTCAGATAGTGGAAGCAGCACTGAAGTTTCATCAATAGAGAGGTCAAGTAGTTTAAGATGGAGAAATGTTTTTGGAGGATTCTTATCTAGGCAAAGTAAGTCGATGAGGCGGCTTAGTACATTTCCTCCTGTAATTAGAAGTTCAATGGAGATTGAAGTGCCTCAAGAAGAAATGTTGAAGGGGAGACATTCATGGAGAAGCTTCGATTATCAAGAGCTTGTAGTTGCTACTAATAATTTCAGTTCAGATAAACTAATTGGAAAAGGAGGGCATGCCGAGGTATACAAGGGTTGTCTTCCTGATGGGCAACTGGTAGCAGTGAAAAAGCTAACGAAAAAGCAAACTGAAGATGAAAGAATCAGAGATTTTCTATCAGAGCTTGGTATTATCGGTCATGTTAACCATCCGAATGCTGCACAGTTATTAGGATTTAGTGTCGAAGGAGGATTATATCTTGTTCTACAATATTCACCTCATGGAAGCCTTGCTTCTGTGCTTCATGGTTCAAAGGATAGACTAGAGTGGAACATCAGATTCAAAATTGCATTAGGCATCGCAGAAGGACTATTATATCTTCATGAGGGATGTCAAAGACGAATTATTCATAGAGATATCAAAGCATCTAACATTCTTCTCACAAATGATTATCAGCCTCAGATCTCCGACTTTGGGCTTGCAAAATGGCTTCCCGATAACTGGAACCATCATATTGTTTCTCCCATTGAAGGAACTTTCGGTTATTTGGCACCAGAATATTTTATGCATGGAGTGGTCAATGAGAAAATCGATGTCTTTGCTTATGGTGTTTTGCTGCTTGAGTTAATTACTGGACGTCGAGCTGTCGACTCTTGTAGGAAGAGCCTTGTAATCTGGGCAAAGCCATTACTTGATTCAAACAACATGAAAGAACTTATCGATCAGTCTTTAGCCGATACTTATGACTCTGATGAGATGAAGCGTGCGGTTTCAGCTGCTTCGATGTGTATTCACCACCTCTCTACAGCACGACCTACTATGAATTCTGTTGTTAGTCTGCTGAGAGGCGAAAAAGAATCTTTGGACATGATTGGGAGAGTGAAGAAGCTAAATATGTCAAAACCAACACCTTTGTTTGATGCAGGGGACATGGAAGACTACACTTGTTCAAGATACCTCAATGATTTAAACAGACACAAGCAACTTGCAATGGAACAGTGA

Protein

Gene

>AfisC6G05267
AATCTCATGCTTTATGTTGCTGGTTGGACTTAAAATAAGCATTTTTGAGAAAACCCATGTGCTAGCTTTTGTAATGAAGTTAATTGATTATTTTCTTGCATCTCCAGTTATACTTCCTAAACAGAGACACAAGGCTTTCTTGAGTTTTAGAGGTAATTTTTTATGAACTTCTAACTTTACTTTTCATTTTTTTTTTAAAAATAAAATCACTCTCTAAAAAAATGGAAGTTTATAGTTGTGAGAAGATGATAAACAATAACATATCATGGGTTCAGTACAAAAAAGTAGTTTGATGACAAGCCCAGTTAATTTCATTATAGCTTCTGCACAATTATAGAGCAGGCACTTGATTGTTTATTCTAGTAGGAGGATGTCATGTATGCTTGTTTTTTTTTTTTTTTTTTGCATTTTATAGTTTTTCCCCCTCTCTCCCCAATTGCTCTAATGATTAATAGGAAAGTATATATGGAATTAACTGTTTTCCTGTTACAAATTCATATAAGGAAATATATTCCAGAAAGGAGAAATAATAAAAATGTAATCTTTAAACAATTTGAACCATAACTTCCTAATGTGAAACAAAACAATGAAATAAGAAGTTTGGTGAAATTACCAGTTACTAATTAGTGATAAGTACACAATCAAAATCAATTTTTTTACTGGTAATGAATCAGTGTTCTAACATAAATACAGGGAGAAAGACTAAAAGCACAAAACATGAGCTCAGTGACAACGAAAACATTGACAATTCTGATCAAAGCTCGCCACGAGGAGTGTTCGAAACTTCAGTATCAAGCACCGATTCAGATAGTGGAAGCAGCACTGAAGTTTCATCAATAGAGAGGTCAAGTAGTTTAAGATGGAGAAATGTTTTTGGAGGATTCTTATCTAGGCAAAGTAAGTCGATGAGGCGGCTTAGTACATTTCCTCCTGTAATTAGAAGTTCAATGGAGATTGAAGTGCCTCAAGAAGAAATGTTGAAGGGGAGACATTCATGGAGAAGCTTCGATTATCAAGAGCTTGTAGTTGCTACTAATAATTTCAGTTCAGGTGAAACTTTGTCATATTTTTGGCTTATAGGTCGCTTAAGATACACTAAGTCTTGCATTGTTTCTCCAGTGTTTAGCCCTTCCAAGAGTAGAAAGATCAAATACACCAGGCTTACATTGCACATATGTATAATATTTCATAAAAATTTCCATATATGTATAATAATTGTGACCATACTGGAATATATTAGATAAACTAATTGGAAAAGGAGGGCATGCCGAGGTATACAAGGGTTGTCTTCCTGATGGGCAACTGGTAGCAGTGAAAAAGCTAACGAAAAAGCAAACTGAAGATGAAAGAATCAGAGATTTTCTATCAGAGCTTGGTATTATCGGTCATGTTAACCATCCGAATGCTGCACAGTTATTAGGATTTAGTGTCGAAGGAGGATTATATCTTGTTCTACAATATTCACCTCATGGAAGCCTTGCTTCTGTGCTTCATGGTATATTATATTTCATTCTCATGTGCATAAATTTTCATGACTATGTAAATTCTGTTCTCATCTCTATATGTTCATCTATAATAAAATGATCAATCAAAACAAAGTGTATATGTACTCTAAAAATGTAAATATGAATTAACATTTAGATTTTGCAGGTTCAAAGGATAGACTAGAGTGGAACATCAGATTCAAAATTGCATTAGGCATCGCAGAAGGACTATTATATCTTCATGAGGGATGTCAAAGACGAATTATTCATAGAGATATCAAAGCATCTAACATTCTTCTCACAAATGATTATCAGCCTCAGGTAAAATCCTTTGCTTTGTGTGTATTCTGAAACATCGGATTAACCAATATGTGCATGTTTTTCGTAGACTAATTAAATGCATTTTTGTTTGTTTTGCCAATGATCCAAAACACATTAAATCTATCAATGCAGATCTCCGACTTTGGGCTTGCAAAATGGCTTCCCGATAACTGGAACCATCATATTGTTTCTCCCATTGAAGGAACTTTCGGGTAGAAACTAGTTTTTTTTTTCTTTTTCTATAGGTAAATTCAGTTATTACACGTATGCTTATGTTTATAGTATACATAATGTGCAGTTATTTGGCACCAGAATATTTTATGCATGGAGTGGTCAATGAGAAAATCGATGTCTTTGCTTATGGTGTTTTGCTGCTTGAGTTAATTACTGGACGTCGAGCTGTCGACTCTTGTAGGAAGAGCCTTGTAATCTGGGTACACACATAAATTAATCTCTGTAGCAAAATAATACGTTAGTGCATATAATTTCATACTGGTTATTGCTAGAGAACCGCTTATTATCACAATATCGGTTGGTAATGTGAATGGTGGTCTCTTAGTATTTAGAATTTTGTTTTATAAACCGCCCAATGTGAGACTGATCATAACAGCTATGACCAACTGTTTTTATAAATACGCAGGCAAAGCCATTACTTGATTCAAACAACATGAAAGAACTTATCGATCAGTCTTTAGCCGATACTTATGACTCTGATGAGATGAAGCGTGCGGTTTCAGCTGCTTCGATGTGTATTCACCACCTCTCTACAGCACGACCTACTATGAATTCTGTAAGGGCAACAGTCTATTTTAAAAGAAGAAAAATAAAATATGACTGCCTATGTAACAATGATAATCCAGTAATCTTTCATATGAATGAGTTGAATTTTATTTGTATAAATGTAGGTTGTTAGTCTGCTGAGAGGCGAAAAAGAATCTTTGGACATGATTGGGAGAGTGAAGAAGCTAAATATGTCAAAACCAACACCTTTGTTTGATGCAGGGGACATGGAAGACTACACTTGTTCAAGATACCTCAATGATTTAAACAGACACAAGCAACTTGCAATGGAACAGTGAAAAAAATTACAGTAAAATAGCTTTCTTCAGGCATTGAAAATTAATGTCATGCTTAGTTAGATGTCACTGTATCAGTGTATTACAAAGCTTTGAGGTGAACTTTTACAAATATGTACATGTGAAGTGGTTTTAGCATTTTTGTGATGTATTAGAAAGCTTGAATGTTGAGAGTATGAAAATGCGTGTTATATGCAAAAGCATTGCCAGCATAAGCTTGAATTGTTGAAGATTGCATATTGAAATTTTGGAAAGCATACACAACAGACCTTGATACAGAAGTACAACAATTCAAACTCTGTTTCAATTAAGGTTGCGTTTTTTGTATGATTCAATTAAGGTTGCGTTTTTTGTTGAAGCGGAAAGTTCGATGGAGGAGAAATACGTTAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244255.1	3.0e-179	receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2
Swissprot	Q8H1D6.1	1.4e-120	Protein ROP BINDING PROTEIN KINASES 1
trEMBL	A0A5P1EM26	3.6e-174	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65530.1	58.25	1e-127	453		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05267	AT5G65530.1	388	132	6	112	480	80	456	58.25	1e-127	453
AfisC6G05267	AT5G10520.1	397	155	6	101	480	79	467	54.66	7e-125	444
AfisC6G05267	AT5G18910.1	395	163	6	103	479	117	506	52.91	1e-118	423

Ortholog group

Species	Genes
Allium cepa	g132328.t1
Allium fistulosum	AfisC6G05267
Allium sativum	Asa0G00005.1
Arabidopsis thaliana	AT5G10520.1; AT5G65530.1
Oryza sativa	LOC_Os06g45350.1; LOC_Os06g45350.2; LOC_Os06g45350.5

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	164	426	146.8	6.9e-43

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005829	C	cytosol
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005634	C	nucleus
GO:0007166	P	cell surface receptor signaling pathway
GO:0019722	P	calcium-mediated signaling
GO:0009623	P	response to parasitic fungus
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009814	P	defense response, incompatible interaction
GO:0009845	P	seed germination
GO:0010068	P	protoderm histogenesis
GO:0010150	P	leaf senescence
GO:0012505	C	endomembrane system
GO:0019901	F	protein kinase binding
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development
GO:0051020	F	GTPase binding
GO:0071369	P	cellular response to ethylene stimulus
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network