result

Gene information

Detail information of AfisC6G05270

Location

Gene	Chr	Start	End	Strand
AfisC6G05270	chr6	931549582	931552724	+

Sequences

CDS

>AfisC6G05270
ATGTTCCCTTCAAATAAGAAAGGCGGTAGTATGAATTCTGTAGTAGTATATGATCAAAATAGGCAGCAGCAGCAGCAGCAGCATATGCCATGTGTTCAAGGCGATTCTGGACTTGTTCTTACAACTGATCCTAAACCAAGATTACGTTGGACTGTCGAGCTTCATGATAGATTTGTTGATGCTGTTACTCAGCTTGGTGGCCCTGATAAGGCAACACCAAAAACAATCATGAGAGTTATGGGTGTAAAAGGTCTTACACTCTACCACCTTAAGAGCCACCTTCAAAAATTCAGGCTTGGAAAACAACCGCATAAAGACTTCAATGATCATTCAGCTAAGGATGGTTCCGGACTTGATCTCCGTAGAAATGTTGTTTCTTCTTCAGGAATGATGGGACATAACATGAATCATGATAGGAATGTCCATCTATCAGAAGCTTTGAGGATGCAAATGGAAGTCCAAAGGAGATTACATGAACAACTAGAGGTGCAAAAACACATACAAATGAGAATTGAAGCTCAAGGAAAGTACATGCAATCGATACTTGAAAAAGCATGCCAAACTCTTGCAAGCGAAAACAATATGGGAAACCAACAAGGGGGTATAGATATGGGATCTCCTTTAAATTACCCTTCTCTTCAAGATCTTCATATCTATGGAGGAGATCAACTTGATGGTTTCTTTCCAAATAATAATGAAACACTAAGTTTAGGTAAGAAGAGGCCTAACCCATACACCAATTCTAATGGTAAAAGCCCTATGATTTGGCCCGATGATCTTCGACTTCAAGATTTGGGATCTCAGGATCAAGACACATCAAAAAGTGATCAACTTCAACTTGCAACATCTCATGTAATTGATAGTGGTATAGATATGGAGTCAATAACCGGCGTTTATGAGCCCAAACCTAACTTTTTGGGAGATAATGAGAAAAAGTTCGATGAATCTTCAAAGCTTGAAAGACCATCTCCAAGAAGAGCTCCAGCGATGGAAAGGCTGAATCCAATGATAAGAAGCGGTGTTTTGAATCAAGCGAGAAATTTATCCTATGGGTAA

Protein

Gene

>AfisC6G05270
GAAAGAGCGAGAGAGAGGAGGGAAAAAAGAAGAAGAATGTTCCCTTCAAATAAGAAAGGCGGTAGTATGAATTCTGTAGTAGTATATGATCAAAATAGGCAGCAGCAGCAGCAGCAGCATATGCCATGTGTTCAAGGCGATTCTGGACTTGTTCTTACAACTGATCCTAAACCAAGATTACGTTGGACTGTCGAGCTTCATGATAGATTTGTTGATGCTGTTACTCAGCTTGGTGGCCCTGATAGTATGTGTTTTTGTTTGTTTGTCTTCTTTTTTGATTTTCAACTACTTTTAGTTATCATAGCTCTTTTCATCATTTAATTGTCTAAGCCCAATGAATTAATTTTCTTCTTCTTTGGTTCTACTTTTAGTTTTAGTTTGGGTTGTTATGGTTGTTCAATTGTAGTAATTGTTTAAGTCTTCCTAAGCCTTAACCCTATTTTTTTTCTTCTTCTATATGTTATCTCTCTTGTTGATCCTCCAGATTTTGCTAGCTAGTATTCATGTTATTTTCTTTCAGCTGCTTAATTGTTTTTTTTAATATAGTTTTTCATAATTAAGTTTCGGTTACAATATTTTGTCGATTATTTTCATCAATACCTGGTTTGTTTGGCGTATATCTGACTTAATTTGTATTCATGCTTTAATTCACAGAGTTAGTAACTTACTGTAAAATCAGATTATGAATTCATCTAACAATATACACTTCTGACTTATTTTTGTAGAGGCAACACCAAAAACAATCATGAGAGTTATGGGTGTAAAAGGTCTTACACTCTACCACCTTAAGAGCCACCTTCAAGTATGTCCATATGCACAGAACTTATTGCATTGAACTTTATTTCTTATATCTTATCTTTTTCACTATAAATATGTAGAAATTCAGGCTTGGAAAACAACCGCATAAAGACTTCAATGATCATTCAGCTAAGGATGGTGAGGGTTTGTCCGCTAATTTACATGCATGTATTTATCTTAAGACTTATCATATATTTTTAAGTTCATAATCTTAAATGCGAGTTCGATTTTTTTCATAGGTTCCGGACTTGATCTCCGTAGAAATGTTGTTTCTTCTTCAGGAATGATGGGACATAACATGAATCATGAGTAAGTTATTATAACCAACGTTTGTTTTATAGAACAATTTCCCCCCTTAACAAATTATTATGCTTGGATAAAAATTATTTTGCTTGCTTTATACATTACAGTAGGAATGTCCATCTATCAGAAGCTTTGAGGATGCAAATGGAAGTCCAAAGGAGATTACATGAACAACTAGAGGTAAATTTAATATCTCTTACAATATTACCGTCATTCCCATGCATAAGACCAATGTAAACCTGGATAGGCCCATAAACATCATCTTGAATCATCTTCATTTTCTGAAATTTTAGGTGCAAAAACACATACAAATGAGAATTGAAGCTCAAGGAAAGTACATGCAATCGATACTTGAAAAAGCATGCCAAACTCTTGCAAGCGAAAACAATATGGGAAACCAACAAGGGGGTATAGATATGGGATCTCCTTTAAATTACCCTTCTCTTCAAGATCTTCATATCTATGGAGGAGATCAACTTGATGGTTTCTTTCCAAATAATAATGAAACACTAAGTTTAGGTAAGAAGAGGCCTAACCCATACACCAATTCTAATGGTAAAAGCCCTATGATTTGGCCCGATGATCTTCGACTTCAAGATTTGGGATCTCAGGATCAAGACACATCAAAAAGTGATCAACTTCAACTTGCAACATCTCATGTAATTGATAGTGGTATAGATATGGAGTCAATAACCGGCGTTTATGAGCCCAAACCTAACTTTTTGGGAGATAATGAGAAAAAGTTCGATGAATCTTCAAAGCTTGAAAGACCATCTCCAAGAAGAGCTCCAGCGATGGAAAGGCTGAATCCAATGATAAGAAGCGGTGTTTTGAATCAAGCGAGAAATTTATCCTATGGGTAAGCATATTTGTTGCTTAATCGTGTATGGATATATATCGAGTCTTGCCTAAACTAAATAAGTAATTATATATAATGGGGTGATATAGATTAATAGTGTACAACTAATTATTAAACCCAAATCTTAATTAGTGGTTTTTTTCCATATGTATTTCTTATGAAAACTTATGTTCTACATGTTTATGTTATTGTTATGTTATTATTAAGGGTGTAATAATTTTTGTGGCAAAGTGTTTGCATGCCCTAGGGTTTTTTAATTCTTGTGTGCAAACAAAATATATTATATATATGCCACTAGAAGTTGTACTTTGTGATGTATTGTTATTTAAAATTAAAGTTAGCTTGACATGACCCTATATAACTTTCATCATTATCAGCAATTTTTTTTGGATAATTAAAATGAACTAATTGACAATTTCTACCGTCATGGAATTTGTTAATTATGGCTGTGTAACCAAAAGTGCAGCACCATTAATCATAGTTGATCTTTTCTTGTATTTCGTATATAAGTTTATACCATTTATTGCTTATAAATTTTTGCTCTTGAAATAATTTGAATAAATATGAGAACATTGCCTACATTGAACACTTTTTTCGTGATCATTTATGCATGTCTGTATGATAATGTACAAAACTACCTTTTACACCAATAACTAATTCATAGCGCTGCACAAGTAAGTTTTTTGTTATGATTGCCTGTCAATTTTTATGTTGATTTACCTAAATCCTCTAGTATTCAATCATTTGGAAATCTATGTCATAAAAAGAATATACAGAAGATGAACATATAAATATGCAATCTATTAACTATAGGTTCTTCACAATGTTCAAGGCTTCTTTGTTTTGATAGATGCAGTGTATATTCTTGGTCAAGATTTCAATGTCTATTCATAACAATCTGATGTTCTACATATTTAATCTCTCATAATTTGTTCTTTTAACAACTAACGAAGCAACACTTTACAGCCTTGCTTTTTTAGTTAGTTACTGACATAGTAGTTACTTTCATCATTGCAAGCAATAAACTTTGGAATTGTTTACATTACCATGCAAATAGACAACACTTTTTTATGCACCACCCTATATAACATGGTTATATATTCAAATGTAAAAAAAGAAAACTATATCGATAGAAAAATAAATAAAGCATTTGGTACAAATCGCGATACAGCACAACCCATTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244725.1	1.6e-113	myb family transcription factor APL-like isoform X1
Swissprot	E5L8F7.1	2.0e-92	Interacting protein of NSP2
trEMBL	A0A6I9SDY9	4.3e-108	myb family transcription factor APL isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G79430.2	54.02	9e-87	317	APL;WDY	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05270	AT1G79430.2	361	104	14	31	351	20	358	54.02	9e-87	317
AfisC6G05270	AT1G79430.1	315	102	14	77	351	1	293	47.94	1e-57	220
AfisC6G05270	AT3G24120.1	158	48	2	34	189	30	186	67.72	1e-56	216

Ortholog group

Species	Genes
Allium cepa	g132338.t1
Allium fistulosum	AfisC6G05270
Allium sativum	Asa8G01992.1
Arabidopsis thaliana	AT1G79430.1; AT1G79430.2
Oryza sativa	LOC_Os02g07770.1; LOC_Os06g45410.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	47	97	30.9	2.1e-07
PF14379.3	Myb_CC_LHEQLE	Family	142	188	89.2	9.4e-26

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003913	F	DNA photolyase activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009650	P	UV protection
GO:0010628	P	positive regulation of gene expression
GO:0016036	P	cellular response to phosphate starvation
GO:0043565	F	sequence-specific DNA binding
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network