result

Gene information

Detail information of AfisC6G05414

Location

Gene	Chr	Start	End	Strand
AfisC6G05414	chr6	953164136	953167711	-

Sequences

CDS

>AfisC6G05414
ATGAATTCAACCAAATCGAGTAAAAACTGGATAGCTTCTCAAGACATTCTAGCCAATCCATCGACTTCCCAAAACGCCCTTAACCCATTCAAGAATCACTACTCAAACCAAGAACCAGAACTCATAATGTCTCCACCTCAACATTCATTTTTATCCAGTTCTTCTAGTTTTTGCACAAGTCTATATTTGTCATCTCCAGCTACGTGTCGCCAGTTAACCAACTTACCATTTCTACCCCACCCTCCTAAAAATGAACAGCTTGCTTCTGCAGTAGAATCTTCTAAGTCTCCTTCTCTATTCAGCAGTGATGTAAATGGAATGTGCGTCGAAGATGATCAGTCTGATGATTTGTTAAAAGACTTCCTTAATTTATCTGGAGATGCTTATCATGATCATGAAGATTCTATGATGAATGAGCAAATGGATTTGCAGCTTTTGTCTGAGCAACTCGGCATTGCTATCGCAGATAATGGTGAAAGCCAGTGCTTAGATGATATATATGAGACAACATGTGGACCAACTTCGCCATGCGAAAGTGAGAAGGGCTGTGAGCAACAAACGGGCTCACGGACAAAAATTGAGCTATGTTTAGGCCCAACGGTTTCATCATCTACATTGGCAAATAAGCAAAGATTGAGATGGACAGTTGAGCTTCATAACTTGTTTGTAGAAGCAGTGAGCAAACTTGATGGCCCTGAGAAGGCAACTCCAAAAGGTGTGCTCAAGATTATGAATGTTGAAGGTCTTACTATTTATCATGTCAAGAGTCACTTGCAGAAATATCGACTAGCCAAGTATCTTCCGGAGACAAAAGAAGAAAAAAAGTCTTCGAATTCTGAAGAGAGGAAAACATCAGTTTCAAGTGAGCAAAATGATGGTTCTGTTTTGAGGAACAAGCAAGTAACAGAGGCACTTAGGCTGCAGATAGAAGTCCAGAAACAGTTGCATGAACAACTTGAGGTACAAAGAACGCTTCAACTGCGCATAGAGGAGCATGCCAGGTTCTTGCAAAAGATTCTTGAAGAGCAACAAATTGAGTCTAACGACTCATCGACCTTTTCGAAGAAAGCACCAAGTCATGAAGATGCACAAACCGAATCGTCTGATCCTACCATAATAGAGAGAGATGGCACATTACCTATGATAGATAATTTAAAGAATAAATCTACGACTTCTGAGTTAGAAGAACCTCACAAAAGGCAGAAATTGGATGATATGCTTGGAGAAGTAGTTTCGTCCTCATGA

Protein

Gene

>AfisC6G05414
AAAAAGGAGAGTACCAGCTCCAATCATTATTCTCTCTATCTGTTTTATTAGAGAGAATGAGATTTGGGCTTAGATCAACTCCAACACTTTGAAGATCCAGAATTTCAATTTCAAGATTTAATTTGAAGTAAGCTTCCTATCAATTTTTTTTAGTACTTGATGCATTGCAACATAATCTATTCTTGTGCTGTTAAGTTTTCATATTATGATTATGGTGTAAATTAATTAGAAAATTGAAATGCTGAGAAATTGTTGCATTGGCCATGTAGTAGAAATAAGTTCAATATCTACCTTGCAAAAGGGAGTTAAAATGAAGATGATGTGATTTCTGTTAAGCTCATTTAGTATAATATATCAAAGGTCTATGTAAATAAAAGTTTTGATTTAGATTGTCCATTTATACAAGTTTTCAGTACAAAATCAGTATAAATGTGTACACATCAAATCTTATGGGTTACAGTTATTTCTGCTGTTGTTGGTTCACATTTTTATTTAGAACTTTGCTTATTTCTTTTTTTTCTTTTTCTTTTTTAGTTTCTGGCAGTAGCTGGTCAAAGTATCATACTACACTAGTTCTCTTTTATGGGGACACAAGAGTTAGATTATGTAAATACTTCGAAAAATGAATCATAGATACTTATCATGGTATGAAGTAGAAATTATTTAACAGTATACTAAATTATGCACAGTTAGCTATTTGATATGTTTCTCTTTTTTTTTTAACCATAGATACTTATTATCATGGTATTATGAAGAGAAATTATAGAACGGTATACTAAATTATGCACAGTTAGCTATTTGATATGTTTCTTATTTTGTTTTATTTTCTAAAAAGAAGATAAAAGATTTTTAGTGGGTTAGACCAGATAGTGTGAGACTTTTGTCTGATTTCCTTTGTCATTTTTCTTATGTTTCCAGGTTTGGATTAAGCGTTCAAACATATACTGCTTCTAAAATCATATCCAACTATAGACTTCTGAATAAGGCATCATAAACATTCAGTTCAAACACGTTACAGCTGACCTAAAACTCCTCATTTCAAAGTTATTAGAACTAATCATGAATTCAACCAAATCGAGTAAAAACTGGATAGCTTCTCAAGACATTCTAGCCAATCCATCGACTTCCCAAAACGCCCTTAACCCATTCAAGAATCACTACTCAAACCAAGAACCAGAACTCATAATGTCTCCACCTCAACATTCATTTTTATCCAGTTCTTCTAGTTTTTGCACAAGTCTATATTTGTCATCTCCAGCTACGTGTCGCCAGTTAACCAACTTACCATTTCTACCCCACCCTCCTAAAAATGAACAGCTTGCTTCTGCAGTAGAATCTTCTAAGTCTCCTTCTCTATTCAGCAGTGATGTAAATGGAATGTGCGTCGAAGATGATCAGTCTGATGATTTGTTAAAAGACTTCCTTAATTTATCTGGAGATGCTTATCATGATCATGAAGATTCTATGATGAATGAGCAAATGGATTTGCAGCTTTTGTCTGAGCAACTCGGCATTGCTATCGCAGATAATGGTGAAAGCCAGTGCTTAGATGTAAGTCCAAGATTTTGATTATTCGTTATAGTACAATGTGTAAAATGTTTGAGTTTAAGCATAAAATCTATGACTTTATGATACACATATATCAGAAATAGAATTGTATTTCATATCATCAGTAAATAGAGAACATACCTTCCATGGATTCTACTTCTTGAACATTGTATTACTCCTTTATTGTTGTTTCTTATTCACTTCACACTCACTTTATAATAGGATATATATGAGACAACATGTGGACCAACTTCGCCATGCGAAAGTGAGAAGGGCTGTGAGCAACAAACGGGCTCACGGACAAAAATTGAGCTATGTTTAGGCCCAACGGTTTCATCATCTACATTGGCAAATAAGCAAAGATTGAGATGGACAGTTGAGCTTCATAACTTGTTTGTAGAAGCAGTGAGCAAACTTGATGGCCCTGAGAGTAAGTGCAGTGCTTTGAACTACTGTGGTTTAAAACTATATTTGCTTGTACAACATATATAATGTGGTCTTCTTTTTATGTAGAGGCAACTCCAAAAGGTGTGCTCAAGATTATGAATGTTGAAGGTCTTACTATTTATCATGTCAAGAGTCACTTGCAGGTATTGTATGATCTTACCAATATAATGTGTTTGCTCATATATAATGCTAGAAGTATCTCACTTTGATTTTATCACCGTTAGTGATGATCATCTATTCTTTCTTTACAGAAATATCGACTAGCCAAGTATCTTCCGGAGACAAAAGAAGGTATCATATACAACCATATGAGAAGGAAGAGATCAGATACAATCATATAGTACACTTAGTATCTAATTTTAGGTTATATGTGCAGAAAAAAAGTCTTCGAATTCTGAAGAGAGGAAAACATCAGTTTCAAGTGAGCAAAATGATGGTTCTGTTTTGAGGAACAAGCAAGTAACAGAGGCACTTAGGCTGCAGATAGAAGTCCAGAAACAGTTGCATGAACAACTTGAGGTATGAATAACATTTTTTTTCTCCCTTTTTTTCTCGATAACTATGCAGATATTATTAAACACTGCTGTGGTTAAATTTATTTTACCCACAAATACTTTTTACGTACTGACTGAGGATAAAAGTTATAAAATATTACCAGGCTCATGTAGTAGTGAAGGGTACAAAGTAGCAGTTTTCAGGCACCAACATTTCGCAATACTACAGCTTCTTCTTCCTAACTTGCATCTTTTTCATTCTGGACATGTAATGAAATATTGCTAAACATAAATTTCACAATGAGTTAGTTATATTGTAATGAAATACTGCACATTATGTATTGCAGAAGTTCATTGTACAAAAATTTTCTTCCAAGGGCTTGAAAAATCAAAATTAAAATCAAGCACATTGGGTTGTCTTTGTTCATGTCATTGCTTTATGCTTTCCAATCACCCTATCAAACAATTGAATTACTCTAAAAAACACTTTTTTACTACATTATCATATCTACATTGCGATTAACAACAAATGATCAAATTATAGGTACAAAGAACGCTTCAACTGCGCATAGAGGAGCATGCCAGGTTCTTGCAAAAGATTCTTGAAGAGCAACAAATTGAGTCTAACGACTCATCGACCTTTTCGAAGAAAGCACCAAGTCATGAAGATGCACAAACCGAATCGTCTGATCCTACCATAATAGAGAGAGATGGCACATTACCTATGATAGATAATTTAAAGAATAAATCTACGACTTCTGAGTTAGAAGAACCTCACAAAAGGCAGAAATTGGATGATATGCTTGGAGAAGTAGTTTCGTCCTCATGATTTTAGTTTTCAAACTATATTTCTCCAAGTTGTATGTAATTTGTACTTGAATAGATTTTAAACAATGCTGAGCAACACTTGAGTTGCACTGTTGTTAGGACTGAGGGCAAGCTCATGCATATCCATTCTGATTCCACCATTACTTTCCTCAACTCGAGATTTTCTTTTTCCTTTTCCTTTTCCTTTTTTTCCCCTATTACCGTACATTCCATTTTTATGTACCACAGTTCTTGGGTTAATTCTAGTATTTTTGCAAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245964.1	3.3e-73	protein PHOSPHATE STARVATION RESPONSE 3 isoform X2
Swissprot	A2X0Q0.1	5.1e-55	Protein PHOSPHATE STARVATION RESPONSE 3
trEMBL	A0A5P1FXU8	3.1e-73	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13040.1	46.93	7e-79	291		myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05414	AT3G13040.2	375	165	11	56	406	77	441	46.93	7e-79	291
AfisC6G05414	AT3G13040.1	375	165	11	56	406	77	441	46.93	7e-79	291
AfisC6G05414	AT2G01060.1	141	48	2	204	344	10	146	63.12	5e-46	182

Ortholog group

Species	Genes
Allium cepa	g318791.t1
Allium fistulosum	AfisC6G05414
Allium sativum	Asa8G01778.1; Asa8G01779.1
Arabidopsis thaliana	AT3G13040.1; AT3G13040.2
Oryza sativa	LOC_Os02g04640.1; LOC_Os06g49040.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	211	262	31.3	1.5e-07
PF14379.3	Myb_CC_LHEQLE	Family	300	344	71.4	3.2e-20

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003913	F	DNA photolyase activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009650	P	UV protection
GO:0010628	P	positive regulation of gene expression
GO:0016036	P	cellular response to phosphate starvation
GO:0043565	F	sequence-specific DNA binding
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network