result

Gene information

Detail information of AfisC6G05419

Location

Gene	Chr	Start	End	Strand
AfisC6G05419	chr6	953713598	953715559	+

Sequences

CDS

Protein

Gene

>AfisC6G05419
ATGCTCTGTCCAACGCCCTTCTTACAACTTGCATTATTTGCCCATTGTAATAGAGAGATATTACAACGATCAACTTCTGCCCGTTGTAATGGAAGTATATTTGACAACATTCAGCAATTGGCTGCTGCAATAGATTAAATACGAAACTTCTCTCTCCCGTTATCACGTGGTTTATCACTACGAAATTAGATCTCGAGCCACCCCTACTAAAATTTCTCGATCCCAAATAAAATTTCTCGATCCACATGATTTTAAAAAAAAACCCCTTCAGATCTCTGAATTTCGGTTCCCCAATCCAGATCGCAACTTCCAAAATTCTACCCTCGAGCATCGCATCCAGCCTTCTCAAATTTCTATCACCAAGTCCACTCAAATCTCCATCACTATCTCTATCTCGTTGCGTAGACCCAACCCGATTGCAAAAATCGCTGAGATCCGAGGGAGTTGTACATGCGAGATCGGAGTGAGGGAATTGTATGCGCGAGCTTCTCATTGGATTCAACATGGTGGTGATCGTACCTTAACTTATGACATAGAATCGCAACTCCTCAGTTCCAAAAGGTATTTTCTGTTGTTTTATTTACTTATTTTTTATATGCATTTAGGAATATGTCGTACTAGAGTTCGACAAAAGTTGCTTTCACTTTGAGCAAATCTGTGGTGATATTATTATTCAATAGTTGTCGGATTTGATTCATTGGAGACACTAAAGATAAAACCACGTACTGTTTTGTTTTTTGTAGTTATTGTTACTCAATACTGTGCAAATTATAGAATGTTGACTATTTTACTCATCTTTGTGAGGTTTCAATTGTGATTGTCTGCTGATTAAGATGCTGATAATTAAAGGGATTTCCATTTCTGTGGAAGCAGCTAATTGCTACTTATATGACTTAAATGAACATTCATAACAAAATCTAATTGACAAATACATATACTGCTGTTGAAGAGCTTTTTCAGGGACTACTTGCAGGTATGCATTATTCGAGTAGATCTTTGACGTGATCAGAAATGTATCAGTTGACTACAGTATTGTTAAGTTGCTAGCTTAAATTGAGTTATTAATTAAAATACTTCTAGGTTTGAATTGTTTATATTATTGTACGCTGTAGAGGTACTGTTCCTTTTGATTTAAGTTTATTGAGTTGACTAAATAATTGTGTTTTTAACTTCTCAATTTGTGGTTTGTTTAACTTTTATTCTTGATTAGTATAGGATAGTCTTCAAATTAAATTTCTGAAGAGTGAAGATGAAACATTAGTTGCACCTAAACATGTTTTGAAAATGGTTATTGATTCATAGAAAAGCAAATGCATGATTTCACAAATTTATGTTAACAAATGTTGAGTATTGAGTATGATTTCGGACTTAACTATTCGTTTCTACAGCTCAAAGGGATCCCAGTATCAGCGGAACCAACATAGATGAGGAGCAAAAGCAAGCATTTACAGGGCTTTTGGATGGAAATGGTGAATATACTTTAGTTTATGAAGATAATGAGGGAGACATGATGCTTGTAGGTGATGTTCCCTGGGAGTAAGATTTTTTTTCCCTTTTCATAATTTAATCTTTGTATCTATTTTCCCAGTTATTAAACATGCAAAATATACAAGTGGCATTTCAAAAAGAACAACATAATCTTGTGGTTTAACATAGAGATTTACCTGTGCCATAATCTAGAAATTATGGAGATATCAACAGAGGAGAATCTAAATGTATATGTTGATGCTTAAGGTTAATTATGATCAACAAAGGGTCATTCATTTGCATACAAAAACTAAAATACCGATAAATTGTAGTTAAAATAACATTAAAATTATGTGGTACTGCTTATCAATTGCAAATGGAATATTGTCTATAAATTTAAGCTAACTTATTGCTATTTGTTTGGAAATTGCAGGATGTTTGTTTCAACAGCCAAGCGACTGAGGGTGCTAAAGAGTTCCGAACTTTCTACAATCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010915383.1	3.5e-21	auxin-responsive protein IAA16 isoform X1
Swissprot	O24408.2	4.6e-18	Indoleacetic acid-induced protein 18
trEMBL	A0A8K0I3V5	1.1e-21	Auxin-responsive protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G51950.1	55.21	1e-20	94.4	IAA18	indole-3-acetic acid inducible 18

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05419	AT1G51950.1	96	33	4	9	100	164	253	55.21	1e-20	94.4
AfisC6G05419	AT3G16500.1	54	16	0	47	100	202	255	70.37	1e-18	88.2
AfisC6G05419	AT2G33310.2	44	14	0	54	97	184	227	68.18	4e-14	72.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	39	99	92.0	4.5e-26

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003993	F	acid phosphatase activity
GO:0005634	C	nucleus
GO:0005740	C	mitochondrial envelope
GO:0005768	C	endosome
GO:0005802	C	trans-Golgi network
GO:0006109	P	regulation of carbohydrate metabolic process
GO:0006417	P	regulation of translation
GO:0046983	F	protein dimerization activity
GO:0009880	P	embryonic pattern specification
GO:0009734	P	auxin-activated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0010051	P	xylem and phloem pattern formation
GO:0010102	P	lateral root morphogenesis
GO:0010200	P	response to chitin
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0030943	F	mitochondrion targeting sequence binding
GO:0045040	P	protein import into mitochondrial outer membrane
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network