result

Gene information

Detail information of AfisC6G05817

Location

Gene	Chr	Start	End	Strand
AfisC6G05817	chr6	1022574239	1022577308	+

Sequences

CDS

Protein

Gene

>AfisC6G05817
CTTTCTGTACTTATTCAAATATGTGTTTTTTATATAAATTTAATTCAGCGTCACATAAAAGTCATCATATTTTGAATTATTAAGGAGACAATCTGTAAACCAACAACTCTAAACTGAAACTGAAATCAAGCACCTCGTTTTCCCATCAAAACTTTACGATGCGTATAAAATACGGAGACGATAAAATAAGTCTGACCTGAACTGAGTAGCCAAATTCCATGAACTAAAAGCTAAAGTCAACATGACTTCCCAATCCACTCGTTAACAACGCAGCTAACTTACCCCATTTTATCATATGTCTTGACTTCATCACTCTGTTCCAAGAACCTTCATCCTCCAATTTGGTGACGTCGTCCCTTCTCGGATGATGCATGACATCTTTCTTCAATTTCAACTCTTAACCAATAGCAATATTTTACATAAACCAAAACGTCCTTTCCACATATTCTTTTCAAAGTCTTCCCATTAATACACTTTGCTTGACCATTGCTCCTCTCTCAGTATATATACCCTCGTCTCTTCTCCTTTCTCCTCCATTCTTGTTTCCCAGTAGACTCTTTTATAACTTGCCTTTCTTTATATTCATGGAGTATGCATTTTTCAACACTTGTCCCCCTCTCAACCTCGACCTAAACATCGGGTTTTTGCCTGATAATCCAGTGAAGGGCAACGAACTGAAACTACAGGTAAACGCTCTGCAGGCGAAACTAAACAAAGAGAAAGAGGAAAATAGAGCACTAACCGAAAAGCTCTCCGAGCTAGAAGCAAACTACACTCTTCTACAGCGGAAGATATTCGAATACACAGACGCCAACGAAGTGCAGCCGTCGTCGAGAAAGCGGAAAAGCCCAGAAGCGATGGAGTACCCGACCGACCCGATAACAAGCAGCGTATCGAGCGACGAGGAATGCTACAAAAGGGTGAAGGAGGAAGAGGTCAGGCCGAAGATATCGAAGCAATGCGTACGGACGGATCCGGCCGACTCGACTTTGATCGTGAAGGACGGGTACCAGTGGAGGAAGTACGGGCAGAAGGTGACCCGGGATAACCCGTGCCCCAGGGCTTATTTCAGGTGCTCGTTCGCGCCGGGGTGTCCGGTGAAGAAGAAGGTGCAGAGGAGCGCGGAGGATCGGTCGGTTCTGGTGGCGACGTACGAGGGGGAGCACACGCATCCGAGCTCCGTGCCGGTGGAGCCGATCAACAAGAACTGCTCCGTGTCGGTGCAGGCTTCGGGTCCGGTTATTACGTTGGATTTGACCCGGATGGAGAAGAAGAGGAGGGTTGAGGAGGATGAGCAGAGCCGATTTGCGGAGGAGATGGCGACGAGTTTGACGCGGGATCCCGGGTTCACCGCCGCGTTGGCCAGTGCGCTTTCGGGAAGATTTCTGAGACTTTCTTCGGATCGGAGTTTGTGAAAATGTGAATTTTGGGATTTATGATGTTACTTTTGGGCGATTTTAGTGACGACGTTGAAGTGTTGGATGAAATGGTTATACAAAATTCATAATGCGGACTGAACAACCTCCATTTTTTGTTGTGTTTTAGTGCATATTTTTGAAGTGCACCCCAAACTCAAAAAGAATCATGTCACAAAATATTATTTGGAATATACAAAATAAATTCGATTTAAATTTTTAGTAAATAGAAATTTTTTGGAATATACAAAATGCTTTTTAAATGGAACAAAATTTAAGTTCGAAATTTATTTCATTCAAATTCTTTATATGATTTTTCATTTGTTTACGACTTTTGTTATTGTATTCTTATCCATTTGTACTTCATATTTTGAATTATTTTCTAATGCTCAACTAAAAACGAAAGGTGCGCTTTCACGTTTAGACACTAATCATTGAGTTACATTTAGTATTCAACGATTTTCGTAATATCATGTTCTTCAATTAGAAGACATATCATCAACAAACTTATCCATGCATTTGATAGTCAATTTGATTCTGATTAAAGGTACATTCTTGGAAACAAGTCAAATGAATTGTGGTTCGATGAGCTTGTTCTAACACCCCATAAATTTCGATAATAATTTTAACGGTATTGTGTAAATTTAATTAGTAGAGGTAAAAAGTTTAATTTTACAAACGACGAATTCAATGGTGAAAGTCGTGTCAATGTGTAGAGCAAAAGTTTCTGATCAGTTTCGACTATAAAAATGTCGGAATCAGAGATCGTATGAAGGAGATACGGAAGATTCAAGTTGCAGGTTCGTGACAAGCCGAAGCGGGTGAGGTACCAATATTTCGAATTTTGAATTCAAACTGCGTTACCTCCATCTATATAAGTTTGAAAAATAAACATATTGATCATTGTTTGTTTTCCGGTCTTTTCTTCCTCCCCGTTTCCTTCTTCCCTCTTCTCATGCATTACTTCATACCACCATAACTCATTTAATTCTCAACCATTTTGGCTAAACCACGTACAAAAATGAAGATCAAGGTGGGAGCTTGTAACTCCTTGCAAAAATTAACCGGAAATTTAATAAAAGAAATTAAATTAAATGTACTAAGAGTAAAATTGTAATTTTCACAAACATTCGAATTGGCTATGAAACTTACACCACTGCGTTCACAGCGATTTTTTGGATATTTTTCATATATAAAGTTTTGTAATTTGAGCTCGTATGAAAACGCTACTACCCTTTAAAAATTTTGAATTGAAAATAATTAAATACGTATAAGGAAAGAAATATTTTAAAAAGGTAGAGCTCCATCGGTCGACACCCCTGTTTGGACCGGTCGACCCTCCAATTTAGGTACGAACTAGCGATCGACCGGTCGAGCGTTCCACGCTTGGGTTTACTTAGGCCGAACGGTCCAGATTTAATAAAGTTTGATCCAACGGGTGATGTCGATTCGTACCTTTATAAATAGAACCTTAATCTAATTCAAAATGTACCAAAATTATGTCTCTCCCAAAACTAAACTCTCTGTTCTCTCCAAATCAATTTTCTTCATAAAAATAAAAGTTTGCAAATTAAAAATCAACGATTACAAAGAAATGGAATTTAAAGGGCAAACGGAAAGGAGAGAACGATGGACCAAGCGAGGGTGATTCCAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008794348.1	4.0e-59	WRKY transcription factor WRKY76-like
Swissprot	Q6IEK5.1	9.3e-45	WRKY transcription factor WRKY76
trEMBL	A0A8B7C975	2.9e-59	WRKY transcription factor WRKY76-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G80840.1	40.14	4e-49	191	ATWRKY40;WRKY40	WRKY DNA-binding protein 40

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05817	AT1G80840.1	294	130	10	13	269	12	296	40.14	4e-49	191
AfisC6G05817	AT4G31800.2	265	122	5	38	271	48	307	40.38	1e-43	173
AfisC6G05817	AT4G31800.1	265	122	5	38	271	49	308	40.38	1e-43	173

Ortholog group

Species	Genes
Allium cepa	g329409.t1
Allium fistulosum	AfisC6G05817
Allium sativum	Asa2G05849.1; Asa8G01535.1; Asa8G01536.1
Arabidopsis thaliana	AT1G80840.1; AT2G25000.1; AT4G31800.1; AT4G31800.2
Oryza sativa	LOC_Os02g08440.1; LOC_Os02g08440.2; LOC_Os02g08440.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	139	197	88.6	2.2e-25

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002237	P	response to molecule of bacterial origin
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0009611	P	response to wounding
GO:0009685	P	gibberellin metabolic process
GO:0009751	P	response to salicylic acid
GO:0009873	P	ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0050691	P	regulation of defense response to virus by host
GO:0080169	P	cellular response to boron-containing substance deprivation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network