result

Gene information

Detail information of AfisC6G05830

Location

Gene	Chr	Start	End	Strand
AfisC6G05830	chr6	1024228284	1024229999	-

Sequences

CDS

Protein

Gene

>AfisC6G05830
ATGCTACTAGACGGAGAATTCACAGCTCAGGCAACTAAGGACACTGTAACACTGACATTGCAGCAAATAGAAGAGAAACTTAATGGTCGAGTAGTTTTTTTCTGCAAATATTTTATTATTTCTTCTTCTGTTTTTCTCATTTTAACATAATTCTATCGTCTTCTCAAATGTCTGTCCTTTTTTGCTGCATCTAGGTTCTGAGGCATTTGCTATATTTGATGAGAGTAGGAGATAGATGTGTCCAAAGTCGAATTGCTTTGGCTCTTGCTCATCTTTGCTCTATAGAAGATCAAAAAAGAATATTTCTTGATAACAACGGTATAATCTTACTTTCTATAATTCTATTGTCTGGTGGTTTCAATAGATGCTATTCTCTGTTGGTTTTAACAGGTCTGTGGTTTTAATAGGAAGTATGATAACCTAATATGATTTTTATACATAATCGCAGGTCTTGATTTGCTTCTTAGCCTTCTTATTTCTTCAAATGCAAAGCAACAGCAAGATGGTTCGGTAGCTTTGTATCGGTTGACCGAAAAAGTTATTGCATTACATCCACTGGATTCATCTCCTTCACCCATGCCTCAGGTTTGTTTTTATTGCACTGCATAAGTTTTAAATTTTACAACACTATTAGTGAAAAAAATAAGAAAATGTAAACCTTTTCTACCCATAAACATTTAAATATCTCATTGGATGAATATAGCATATAGTTCAACACTTTTTGTCGCACTTACAGGCTTACATACCTGAAGATTGTTTGAACAATCCATCACTGTCAGATGTTACTTTTAATGTTCAAGGTGCGGCTCAAGTGTTCATTTCATTTGTTTTAATTCTTGCTATGTATTTGAGTCATTTAGCCATAAAACACTCAATCATACGTGAATGGTCTGACATGCTACTTTCTTGATAGGTAAGCAATATTATGCATATAAGATTCCGTTAGTTGCCACCTCAGATGTATTTCTAAAAATGTTGGATGGTGGATACAAAGTGAGTTGATTTTTCTACTTCCATGTTATTATTGACCCTAGGTAGATGTGTGCAATCCATAACTGGATACTGTTATATATTTTTCTCTCAATAAAATGACTAATAATATTCAAATTTACTTGATAGGAAAAAGAGGCGCAGGAAATAGATATTCCAAACATTCGTTGGGAGGTTTTTGTGTTAATGATGAAGTACGCAATACACCCTCCTTTAAAGATGCTTGATATTATTTAAGGCTTATGACTGACTTATACTGGAAACAGATTTATACACACTGGATCAGTTGAAGTAAATTCAGAGAATGCACAAGGGCTTCTTAGAGCTGCAGATCAGTATTTCGTAGAAGGCCTGAAGCGGTCATGTGAATATGCCATTTCTAAGGTTACCATTGTTTTCTGCTTTCTTATCAATAAACTGAATCAAGTATATGTTGATTAAAAATATAGTTTCTGTATTCATATAAGGTTTTTAATTCATGTTAAGCGAGACAAAACTGACAATGCCGTAAATAAAAAATAACTATTTAACACTTATGCAGTGCAATAAAAACAAACCTGAGGCATGGGTGAAGGAGGTGAATCCAGTGGATGTAATGCAATAACTTTTTCGGTCAACCGATACAAAGCTACCGAACCATCTTGCTGTTGCTTTGCATTTGAAGAAATAAGAAGGCTAAGAAGCAAATCAAGACCGAATGAGTATTGGTTTATGAAACTGTTTTAT

Functional annotation

Database	accession number	e-value	annotation
nr	AQK85751.1	9.0e-79	ARM REPEAT PROTEIN INTERACTING WITH ABF2
Swissprot	B9DHT4.2	5.9e-75	ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBL	A0A1D6M3N5	6.5e-79	ARM REPEAT PROTEIN INTERACTING WITH ABF2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G19330.1	60.18	8e-75	276	ARIA	ARM repeat protein interacting with ABF2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05830	AT5G19330.1	226	89	1	2	226	411	636	60.18	8e-75	276
AfisC6G05830	AT5G13060.1	237	106	2	2	235	438	674	54.01	3e-69	258
AfisC6G05830	AT5G19330.2	198	69	3	30	226	420	588	50.00	7e-42	167

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00651.28	BTB	Domain	124	226	78.9	2.7e-22

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016567	P	protein ubiquitination
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0008285	P	negative regulation of cell proliferation
GO:0009507	C	chloroplast
GO:0031261	C	DNA replication preinitiation complex
GO:0097237	P	cellular response to toxic substance
GO:2000104	P	negative regulation of DNA-dependent DNA replication

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network