result

Gene information

Detail information of AfisC6G05891

Location

Gene	Chr	Start	End	Strand
AfisC6G05891	chr6	1036231446	1036232534	-

Sequences

CDS

>AfisC6G05891
ATGGATTTTGACTCCCCACTTTTTCAATTTTATGGCGATTCTATTGTATTTCAAGATCTTCAGACCCTATTCGAAAATTGTGAAGATCAACACGTACCCAAAAGTACTTACCAGCTTCCAAGCCTGGATGATATTATCCTTCAACCCGAAACCAACAACAGCAATGGAAATATATTACAGTCACGTGCTGCCGAATTTTCAATTTTTGATATTGATAGTAACATTAATCAGTTTCATGCTTCAGAGACTACACAAAATATTTTGGAGAATTCTTCTTTATTGCTTCCAAACGGTATTTTTACATTTTTAACTAGTTTTACAAGCAAAGTTTCTGATTATAGCAAACTTTCAACTTGCAATAGAATGTTATGTAATCAACATGTTAATGCAAATATCAAATGTTTTATAGGTAGAAAAGATGAAGGTGGAAACAAAAAGAAATCACACTTTGTGAGAGGGGTATGGACACCTGAAGAAGATAAACTGTTAACAAGGTTAGTGGGGCAGCATGGGTACGAAAAATGGTCTTACATAGAACAATTTTTCAAAGGAAAAATTGCAAAACAATGTAGAGAAAGATGGATCAATCATTTAAGGCCAAATATAAAGAAGGATGCTTGGAGCGAAGAAGAAGATAGAATTTTAATCAAAGCGCATATGGAAATGGGAAACAAGTGGTCAAAAATTGCAAAACTATTACCAGGACGAACCGATCATTCAATCAAAAACCACTGGAATGCAACCAAACGAAGAAAGATTCACAAAAAGCACTATGGAGCTTCAAGATACTCTAGGTCAGGGACTCTTTTAAAAAATTATATCAATAGCTTGCCTGAGGAAAAAGCAACTCAATCATCAATCTCACATACCAATATTCTTCAACCTAATAAAATGCCTGAGTTTTATAATGCTCCGCAGCTTCAAGTTAATTATGGAGAAAATTTGAATGGATTCATTACAAGTGATGCTCTTGAGGTGCAACTGAAACGATATAGTGAAACCTCAAGTTTTGGCAAAAAGAAGATGGATATGGATCTTATGGAAATGATTAATACCTTAACGAAATTGCATCCTATTAATTCAACCTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	ONK79403.1	6.4e-57	uncharacterized protein A4U43_C01F6000
Swissprot	Q9LVW4.1	1.4e-40	Protein PLANT GROWTH ACTIVATOR 37
trEMBL	A0A5P1FNV7	4.6e-57	Transcription factor MYB98-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G27785.1	58.21	8e-43	171	ATMYB118;MYB118;PGA37	myb domain protein 118

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05891	AT4G18770.1	132	49	2	146	277	211	340	61.36	5e-43	171
AfisC6G05891	AT3G27785.1	134	54	1	146	277	183	316	58.21	8e-43	171
AfisC6G05891	AT5G58850.1	146	56	3	145	277	96	241	52.74	4e-41	165

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13921.3	Myb_DNA-bind_6	Domain	155	212	61.9	4.4e-17

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0010183	P	pollen tube guidance
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010262	P	somatic embryogenesis
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0016363	C	nuclear matrix
GO:0031523	C	Myb complex
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045697	P	regulation of synergid differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0045995	P	regulation of embryonic development
GO:0051302	P	regulation of cell division
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0055089	P	fatty acid homeostasis
GO:0090307	P	mitotic spindle assembly
GO:1904095	P	negative regulation of endosperm development
GO:2000692	P	negative regulation of seed maturation
GO:2001280	P	positive regulation of unsaturated fatty acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network