result

Gene information

Detail information of AfisC6G05929

Location

Gene	Chr	Start	End	Strand
AfisC6G05929	chr6	1044790310	1044791963	-

Sequences

CDS

>AfisC6G05929
ATGGGCTACCTTTCATGCCGTGCCGAATCATCAATCTCCACCTGCCGTTCGATTACCGCCGTCGCTCCTCCTCCTCCTCCTCCTCAAAAGAACAAGATCTCGGAGAGAGAAGATCAAACCAACAAACAATCAGTTCCTCCGACCAACGTCATTCAACGATTCCCATACGCCGAAATCGAATCCGCCACCAACAACTTCTCCGATTCCTCCCTTCTCGGCCGCGGCAGCCATGGCTCCGTCTACAAAGCCACCATCACCTTCAGAAACGCCCCATTAATCGTCGCCGTCAAACGCGCCTCATCCTCAAGAAAACAGCTCATACCTCCTCCTCCATCCCGAAACGAGGTCGAGAACGAGATCCAGATCCTTTCCGACGTCGCCAGCCCGCGCATCGTCAACATCATCGGCTACACCTCCAGATCCTCCTCCCACCGACTGCTCGTCATCGAGTACATGCCCAACGGCACCCTCTACGATTTCCTTCACAACAACCCTAAACCCCCAAATTGGCCCCGACGATTGCGGCTCGCTTTACAAACCGCCAAAGCCCTCTCCACGCTTCACTCCTTGTCCCCTCCCGTAATCCACCGAGACGTGAAATCGGCGAACGTTCTGATCGATCACAATTTCAACGCCAGGTTAGGTGATTTCGGCCTTGCGATTCGTTTATCTTCCTCTAAGTCTACTCCTCCAGCTGGCACGTTGGGTTATCTAGACCCGTGCTACGTCACTCCTGATGATTTGAGTATGAAAACCGATGTGTTCAGCTTCGGGATATTGTTGCTGGAGATGATTAGCGGGCGGAAGGCGATTGACGTGCAGCATTCGCCGCCTTCCGTAGTGGAGTGGGCAGTGCCATTGTTGAGGAAAGGGAAGGTGAGTGCGATATACGATCCTAGAGTGCCGCCTATCAGGAATGTGAGTGTTAGAAGGCAGCTAGGGTTGCTTGTGGCGCATTGTGTCAAGTCTAGTGATGAGAGAAGGCCTTCCATGGAGGAGGTTGTGGAGCGGCTTAAGATCATTTCGAATATGTTGGTTTCTAGTTCTACAAGGAAGAGTACATGGAATAGGCTAACGGTTGGGAACCCGTGTTCAATGGTGGATGTTGGAGGAGGAAAACCTTTGAAGTTGAACTCCAATAGTGATCAAGTGGTGGTAAGAAGAGATGTGCACATTACTAGAAAGAATGATGAAAACAAGGGGTTGTTTGATGGAGGAAGGAAGGAGAGCAACAATTTGATGGGGTTCTTGGCTCATCCACAAAGTGGACCAAGGATTGTGGAAATTAGTGTAGGTGATTGA

Protein

Gene

>AfisC6G05929
CAAAAACATCATTAAGCTAATTAATAAGTAGATGGGCTACCTTTCATGCCGTGCCGAATCATCAATCTCCACCTGCCGTTCGATTACCGCCGTCGCTCCTCCTCCTCCTCCTCCTCAAAAGAACAAGATCTCGGAGAGAGAAGATCAAACCAACAAACAATCAGTTCCTCCGACCAACGTCATTCAACGATTCCCATACGCCGAAATCGAATCCGCCACCAACAACTTCTCCGATTCCTCCCTTCTCGGCCGCGGCAGCCATGGCTCCGTCTACAAAGCCACCATCACCTTCAGAAACGCCCCATTAATCGTCGCCGTCAAACGCGCCTCATCCTCAAGAAAACAGCTCATACCTCCTCCTCCATCCCGAAACGAGGTCGAGAACGAGATCCAGATCCTTTCCGACGTCGCCAGCCCGCGCATCGTCAACATCATCGGCTACACCTCCAGATCCTCCTCCCACCGACTGCTCGTCATCGAGTACATGCCCAACGGCACCCTCTACGATTTCCTTCACAACAACCCTAAACCCCCAAATTGGCCCCGACGATTGCGGCTCGCTTTACAAACCGCCAAAGCCCTCTCCACGCTTCACTCCTTGTCCCCTCCCGTAATCCACCGAGACGTGAAATCGGCGAACGTTCTGATCGATCACAATTTCAACGCCAGGTTAGGTGATTTCGGCCTTGCGATTCGTTTATCTTCCTCTAAGTCTACTCCTCCAGCTGGCACGTTGGGTTATCTAGACCCGTGCTACGTCACTCCTGATGATTTGAGTATGAAAACCGATGTGTTCAGCTTCGGGATATTGTTGCTGGAGATGATTAGCGGGCGGAAGGCGATTGACGTGCAGCATTCGCCGCCTTCCGTAGTGGAGTGGGCAGTGCCATTGTTGAGGAAAGGGAAGGTGAGTGCGATATACGATCCTAGAGTGCCGCCTATCAGGAATGTGAGTGTTAGAAGGCAGCTAGGGTTGCTTGTGGCGCATTGTGTCAAGTCTAGTGATGAGAGAAGGCCTTCCATGGAGGAGGTTGTGGAGCGGCTTAAGATCATTTCGAATATGTTGGTTTCTAGTTCTACAAGGAAGAGTACATGGAATAGGCTAACGGTTGGGAACCCGTGTTCAATGGTGGATGTTGGAGGAGGAAAACCTTTGAAGTTGAACTCCAATAGTGATCAAGTGGTGGTAAGAAGAGATGTGCACATTACTAGAAAGAATGATGAAAACAAGGGGTTGTTTGATGGAGGAAGGAAGGAGAGCAACAATTTGATGGGGTTCTTGGCTCATCCACAAAGTGGACCAAGGATTGTGGAAATTAGTGTAGGTGATTGAGATAAAATGGAGGGATTTGAGTCTTTCATTCATATTGTAAGAGATTCAAGCATTTGGTGGCAGACCTTGAGCATGCTGTTCAATCTTTGGACTGATGGTCAGTGATGTTTGGGGCCTTCTTGTATTGTACTACCACATTCATTCTTTATGTTGATGATTGCTGACTTGTTGTATCACACCCCTTTTTCCTTTTCCACATCATTAAATAATATCTATACTATGCTATTGATATTGAGTGGAGCTTCTTTTGGTTCAAGCCCCATCCAATTTCTCGAAGGAATTAATTTTGCCCATGTGTATTTGAGAAGCCAAATGTCCCCC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009403351.1	5.6e-116	PREDICTED: serine/threonine-protein kinase-like protein At3g51990
Swissprot	Q9SV05.1	1.3e-90	CRINKLY 4-related kinase
trEMBL	A0A804HR39	4.0e-116	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G51990.1	52.54	2e-95	346		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05929	AT3G51990.1	335	134	5	51	376	44	362	52.54	2e-95	346
AfisC6G05929	AT1G28390.1	370	167	10	1	358	1	343	44.32	1e-76	283
AfisC6G05929	AT1G28390.2	370	167	10	1	358	1	343	44.32	1e-76	283

Ortholog group

Species	Genes
Allium cepa	g128387.t1
Allium fistulosum	AfisC6G05929
Allium sativum	Asa8G01476.1
Arabidopsis thaliana	AT3G51990.1
Oryza sativa	LOC_Os05g32170.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	67	336	141.5	2.9e-41

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000380	P	alternative mRNA splicing, via spliceosome
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003729	F	mRNA binding
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0005777	C	peroxisome
GO:0005618	C	cell wall
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0030139	C	endocytic vesicle
GO:0006406	P	mRNA export from nucleus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009553	P	embryo sac development
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009662	P	etioplast organization
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009786	P	regulation of asymmetric cell division
GO:0009793	P	embryo development ending in seed dormancy
GO:0009809	P	lignin biosynthetic process
GO:0009910	P	negative regulation of flower development
GO:0009986	C	cell surface
GO:0010043	P	response to zinc ion
GO:0010119	P	regulation of stomatal movement
GO:0010223	P	secondary shoot formation
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010311	P	lateral root formation
GO:0010363	P	regulation of plant-type hypersensitive response
GO:0010452	P	histone H3-K36 methylation
GO:0010501	P	RNA secondary structure unwinding
GO:0016117	P	carotenoid biosynthetic process
GO:0016621	F	cinnamoyl-CoA reductase activity
GO:0046686	P	response to cadmium ion
GO:0031062	P	positive regulation of histone methylation
GO:0032508	P	DNA duplex unwinding
GO:0040029	P	regulation of gene expression, epigenetic
GO:0042754	P	negative regulation of circadian rhythm
GO:0042800	F	histone methyltransferase activity (H3-K4 specific)
GO:0042803	F	protein homodimerization activity
GO:0046608	F	carotenoid isomerase activity
GO:0046777	P	protein autophosphorylation
GO:0046975	F	histone methyltransferase activity (H3-K36 specific)
GO:0048046	C	apoplast
GO:0048481	P	plant ovule development
GO:0048653	P	anther development
GO:0048829	P	root cap development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network