result

Gene information

Detail information of AfisC6G05981

Location

Gene	Chr	Start	End	Strand
AfisC6G05981	chr6	1052495086	1052496795	+

Sequences

CDS

>AfisC6G05981
ATGAAGCCAAATTCTAATACAACGACAAACCTCCCCCTCACCCTCTTCACCCACCCCAAAAAAGAGACCATACTAGAACCATCATCAAAATCAACTTCTAATACTGAGCCACAGTTCGCTATACCACTTCAAGAGATCCTGCCTGATAATGTCCATACCAACTTCCTATCCATTTCCCCTAAAAAACCCATTAAGAGATCAAGCAAAATGGTGCGCGTTCGCTGCTTAAACCCACAAGACAGATTATATTTTCTAAACTCGGTTCGTAAGGCGAGAATAACTTTTGATTCTTTACGACTTTCATTCCCTCGCGAAACGAATGCTCATCGACGTGCAGCTTCCCTAATGAGCGCCTGTGGTTTGTGGCTGAACCGCGACAAAAGAATTATCGGGTCCATTCCAGGAGTCAGCGTGGGGGACATATTCTTTTACCGGATGGAACTGCTTATTATCGGCTTGCATGGTCATAACATAGGCGGCGTCGACTACATCTCAGCCGCCAATAGCGAGTGTGGCGAACCAATTGCAACCAGCGTAGTTGTCTTAACCAGGGACGAAGACGATTATGATGATAAAGGCGATGAGTTCATTTACACAAGTCCTCCTAAGCAAGGTCAAAAGGCGAATAAGCACTGTGCAACCGACAAGTTAGAAGAGGACATTCTTGCTTTAGAAAGAAGCATGACTTATGGCGTTGAAGTTCGAGTTATTAGAGACATCCTTTGTGACTGCAGCCCAAACAAAAAAGTTTATGTGTACGACGGGGTGTATAAAATTGTACAATGGTTCAAGGAAGAAGCAGCGAAATCCGGGTTTTATGTTCATAAGTTTAAGCTTTCGAGAATCAAAGGGCAAGAAGAATCAGGTAGCTCAAAATTTACTAGAGCCGCAAATTTGAAAGTTAGTCCACGGTCAGTGAGGCCGAATGGTTACTTGAGTTTGGATATGTCCAGGGGAAAAGAGAGATTCCCAGTACTACTGTTTAACGATATCGATGAGCTAGACGACCCTTTATCGTTCCAGTATGCTAATCGACCATTATTTTCAAAGCATACATATGATAAATTGTCCAAGAAACCTAGACACGGTTGTAACTGTGTAGCTAGTTGTGGTGCAGATTGCTATTGTGCAACAATGAATGACGAAGAACTGCCCTATGATGAAGATGGGATTCTCAAAAGAGGAAAACCTGTTATATACGAGTGTGGACGTTGGTGTAGGTGCTCAGTACATTGTGGCAACAGAGTTAGTCAAGGAGGCATAAAGAAGAACTTCGAAGTGTATAGAGATTTGACTACAGAATGGAGCGTCAGGTCGTTGGATTTCATCAGAGCTGGATCGTTTTTATTTGAAATGAATGGACTATTGCTACCTAAGAAGAAAGCGAAACTGAATACTGTAGAATGTGAGAGAAGTTTGGTTTATCCTAACGAATTTCCAACTAGATGGAGAGAATGGGGAGATACATCGGACGTGTCTCCGGATAATAAGCCCTGTGATCTTCCTTCTTTGCCTGAGTTAGAATTCGTAATTGACGTCTCGACGAGGAGAAGCGTTGCTAGTTATTTGAGTCACAGTGGGGTCAGTCCAAATGTGTTTGTACAATATGTACTTTATGATCATCATGATCATGCCTATCCTCACCTTATGGTGTTTGCTTCTGAAAATATTCCACCTCTCAGAGAACTTAGCTTCGACTATGGAAGATAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262180.1	5.5e-164	histone-lysine N-methyltransferase family member SUVH9-like
Swissprot	Q9T0G7.1	4.2e-124	Suppressor of variegation 3-9 homolog protein 9
trEMBL	A0A199VTA2	1.2e-155	Histone-lysine N-methyltransferase family member SUVH2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G13460.1	45.51	1e-128	457	SDG22;SET22;SUVH9	SU(VAR)3-9 homolog 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05981	AT4G13460.2	523	262	9	62	568	122	637	45.51	1e-128	457
AfisC6G05981	AT4G13460.1	523	262	9	62	568	122	637	45.51	1e-128	457
AfisC6G05981	AT2G33290.1	523	273	9	58	568	124	638	43.98	2e-120	429

Ortholog group

Species	Genes
Allium cepa	g341968.t1
Allium fistulosum	AfisC6G05981
Allium sativum	Asa5G03838.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02182.14	SAD_SRA	Domain	130	285	117.7	3.1e-34
PF05033.13	Pre-SET	Family	317	415	65.3	5.6e-18
PF00856.25	SET	Family	435	568	36.8	4.3e-09

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0016567	P	protein ubiquitination
GO:0005720	C	nuclear heterochromatin
GO:0006342	P	chromatin silencing
GO:0009294	P	DNA mediated transformation
GO:0010243	P	response to organonitrogen compound
GO:0016571	P	histone methylation
GO:0016881	F	acid-amino acid ligase activity
GO:0042054	F	histone methyltransferase activity
GO:0048731	P	system development
GO:0065008	P	regulation of biological quality
GO:0080188	P	RNA-directed DNA methylation
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network