result

Gene information

Detail information of AfisC6G06046

Location

Gene	Chr	Start	End	Strand
AfisC6G06046	chr6	1061802688	1061807273	-

Sequences

CDS

Protein

Gene

>AfisC6G06046
ATGGATTTTGATTTTGGCTCACCACTTTCATTTCAGTTTTGTTATGATTCACAAAAGAACCTGTTCAACAATTGTGAAGATCAACACATGACCAAAAGTACTTATCAGTTTTCAATCTTGGACGATATTTTCCTTCAACCTGAAATCAATAACAGCAATAGATATATACTACAGTCGACTGCTGCTGATTTTTCAATTTCTGATAGTGATAATAATGTTAATCGTTATCATGCACCAGAGACTACACAAAATCTTTTTGGTAATTCTACTTTATTCCCTTCAAGCAATATTTTTCCAACTTCAACTAAGTTTACATACAAAATTTCTAATTATATCAAACTTTCTTTTTACAAAAGATTATTATACGATCAACGATTTAATATAGATATCAAATGTTTGGCAAATATAAAAGATGAAGGAAGAATTGAAAAGAAATCAAAGTTAGTGAGAGCAAAATGGACACCTGAAGAAGATAAATTATTAACAAGGCTGGTGGAGCAGCATGGGTATGGGAATTGGTCATACATAGAACAATTTTTCAAAGGAAAATTTTCACAACAATGCAGTGTAAGATGGATCTACCATCTGAGGCCAAATATAAAGAAGGATGCTTGGAGCGAAGAAGAAGATAGAGTTTTAATCAAATCTCATATTGAAATGGAAAACAAGTGGTCAAAAATTTGCAAAATTACTACCAGGACGAACCGATCATTCAATCAAAAACCATTGGAATGCTGCAAGACGAAGAAGGATTCCAGGAAAGCACCTTCGAGCTTCCAGATACTCTTGGTTGGGAACTCTTTTACAAAATTATATCAACAGCTTTCCCGAGGCTAAAGCAACTCTATCATCAATCTCACATACCGATAGTTTCCAACTGAATAAAATGTGTGAGTTTTACAATGCTCCACAACTTTCTGTTCATTATGGAGAAAATAGGAATGGTTTTATAAAAAGAGATGCTTTTGAGGTAAATGTGAAGCAAGATAACGAAACTTCAAGCTTTGGCAACAAGAAGATGGATATGGATCTTGTGGAAATGATCAATAACCTAACAAAATAACATGGTAATAATTCAACCTAATTGATGTAAGCATAATGTTTTTATCTTCACTATAATATATATCGTTGTTGGAGGGCTTTTAAAAAGTTTGGACAATTGTTTGACAGTACTACAAAGAATATGTTAACAAAGCTTCATTCTAATGGATAATTTATTGATTTTTGTTTGTGTGATTTTTTATGTGTTGACTGAAAATTTTTTGGTTTATAATTAGATAATTAATTAGATTTCATAAACCCGATTCTACTATGATTGAATTGAGGTTTTGACATAATTCTTTCTTCTTCTAATATATTACATTCTAACTCTAAGTCATTGAAGTTATGTAACCCTTTGTCACCTTCTCTTAGCTTGAAACCTGATCGACCTTAATTCAGTGCTCCATTTTGTCTAACCTTGTTTGAGTTAATTTGAATAAAAGTTTTCTGCTGATCAATCTGGGAAAAGATATTGATGAGGCTATATCATCCTATAACATTGACAATTTAATTGCTCATGGTAATCAATCGATAATTTTTACATACTTTAGCTTACTTTTTACTTCTGACCTATAATGGGTACAGCCAGTTTTTGACATATTAATGCTCGATGTTTTTCCTTTCAATTGTGTTGTTTATATGCTCATACCATTATGAATGGATAACTTTGAATATTATGTTTAGGGTCCACATATATTTTACCTTGCAAAATTGCTATTTAATACAATTTAATTAATATAAAAACTAATTGTCGTTAATAAAACAATATGTTAGTTATTTTTCACAAAAATATTCTGGAATGTATACCACTACAAAGGATAACAACCCACTAGATGAGGTGTAGGAGTTCGCACTCATTTGATTGCCAGTCTTCTAGATTGGTTAGATCGCGTGATTTAGTGGACCACGCCACATCTTGAAAAAGTGTATTTGTTGAATTAAAATTAGAAAACCATTAGGTTTGGCTACTAGGGAAAGAGCCATCTTCCATGTATTTATTTGTGCACACACACGTATAAATATGTAGAGATATATATATTCATATTTATGCATTTAAATGTATATGTATATGCATAAACATAAGGGATCACCTCCTGGATATACGTACTTTTTATTTTTGAATTCGGAAGAAACAAAACACTATTTGTTCTAATTTCATCTAATTTTCTAACTTGAGAAAATATTCACAACTTAAACTGATTTATTCCTCTATATCCTTAGAAAAAGTGTTATGTTAACCCACTTTGATCTTAAATGGTAAAGAACATTTTTGAACTATAATGATTAAATCGTGCCTTGATGTGATAATTCTAACCCTATCGTAACATAATATTATATTGTATTAATTTTATTATTTTGCTCAAATTTTAAGCATTCAATAGCTCACTTTTATCACTACATTCACATTTAAATTTGGAAAGTGGATTTTAAATTTAATCATCACTTTCATTTTAATCTTGTTAAGATTCAAATATATTTCAAGATCTTCATATGCTTCTCGATGTTTATGAGGATTAAGAATTAATTAAAAATCTCTACGACTTTCCAAGCTCAAAGAATGAGTAAAAAAATATAATCGGTATATTGCCACCACTATCAAATGGTGACAAATAGGCATGGGAAAGGCGTAGGAAATTCCTACATTTCCCTACATCGATTAAGAATGTAGGTAAACAAGGATATATGAATCGCGTAGAAATTTCCTACTCCTTTCCTATGCCAACTTAACTCCCCTACATTTTATTTCAACATATATTATCAAATCTCTTTTTAATTTTTTTGGTTTTTACTTTTATTATATACATTATTAATTTTATAATAGTGTATAATCTATCCAAAATTAAAATACTAAAAGATATTGCTCATATTTTTAACTAATTTAGCATGATTTAATAAATATCATTTTTCGCTAAATATAAAATTCTTGTAATTTATAATTGTATATAAACTATTGAATATTTAAGATATTTCGTATAATTTTCTAACACTTCTGATGATACAAATTTTTTTATTTCATATTAAATAATATATAACAGTAAAGAATAATGAAACATTTTTTCCTTTTAAAATTCAACCCACGGTACATTGGAAATATACTTTAAATATAATTTTTGTCCTCATAGTTTACCTTTGTTTATGTTATTTGATTTTGAACCTATCGAATAGCTTTAAATTAAATAGTCAAATAAATTAATTATGTTAAACGTTCAAATAACTTATATTGAAATAAAAACCAAATTATACATTCTGAATTATTTTTAAGATTTATTTTGTAAGAAATGATCCTAATAAACTGTAACTAATCCGCAAACGAATCTAATTTTACCGCCATCCAATTCCTAAATTAAATGAAACCCTAATTCTCCTCCATCTAACATCGCACAAATCATATTGTTGCTTTACTCCGCTGTCATCGACCTCTGCTCCATTCGCTAGCTTCTCCTTTGTCAATATCTACTCTAAAATTGTCAACTTTTGTTCCGTCATCATTGCCATTTAATGCTTGAATCTATTACACCCAAATTTTTAATCTAAACAAAAGGGATATCACACTTGGAGAAAGGAAAAGGCTATCATTAAATAAATAAAGGAGCTACTGAAGATCAAAGAAAAAGGATATCATAAATCTAGCGAAGAAGGGCTATAGTAGAATAAAGAAAAGAGCTATCGAAGATCATAGAAAAGGGCTATCATAAATCTAGCAAAGAAGGGCCATCATATATCAAGCGATGAAGGGCTATTGTAAATAAAGTGATGAATGACTGTCACAAATCGAGAATGATGGCTTTCATAAATCAAGCAATGAAGGGCTATCGTAGATTTAGTGTTAAAGAAGTATTATAAATCTAGCGAAGAAATGCGATCGCAATTAAATAATGAAGGGCTATCATGGATCTAATGAAGAAAGGATATTGTTAATTTATCAAAGAAGGTCTATCATAAATCAAATAATTAAGGGCTATTGTAAATCTAGTAAAGAAATGTTATCATAAATTAAATAATGAAGGGCTTTCATGAATCTAATAAAGAATGGTTATTGTAAATCTAGAGATGTTAGGCTATCGGCATCAAGTGATAATGCTACCAAAGATCAAGAAGATGATATCGACAATAAAGTGGTAGACCCATCATAGGTGAAGTAAATGATCCTAGCATGAATAAAGAAGATTATGCTATCGACAATCAAGAAAGTAATGGTATCAAAATATCTAAAAATTATCTTTAAATCTTTTTTGAATGTCCGTGTGGTAGATCCTAAATGGACTAGCCATGCCATGTCAACAATAGAAAAGTGGAAAGCAAAACGATGCAATATGTCACTTCGACGTCGATCAATGTCAGTAGCTTTTTTCCATCCCAAATTTGACCACTACAACATGTCAAAGATCTAAAGGCTCACTTTTCCAATAAATAGGCATGTACCCCATATAAGAAGTGGCAAATTCTAAATTTATCTTCATCCTCAATTTTCATTGCAGACAAAAGATTTAGTGAAAAGCTCGATATCAAAATCGATGGCTTTCATGGTCAAAATGGAATCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK79403.1	4.6e-26	uncharacterized protein A4U43_C01F6000
Swissprot	Q9S7L2.1	8.7e-22	Myb-related protein 98
trEMBL	A0A5P1FNV7	3.3e-26	Transcription factor MYB98-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G27785.1	42.62	2e-25	112	ATMYB118;MYB118;PGA37	myb domain protein 118

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06046	AT3G27785.1	122	68	2	144	264	183	303	42.62	2e-25	112
AfisC6G06046	AT4G18770.1	96	44	1	144	238	211	306	53.12	1e-24	110
AfisC6G06046	AT5G58850.1	138	70	1	148	270	103	240	38.41	2e-24	109

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13921.3	Myb_DNA-bind_6	Domain	153	210	61.3	7.2e-17

Gene Ontology

Accession	Ontology	Name
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0003713	F	transcription coactivator activity
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0010089	P	xylem development
GO:0010119	P	regulation of stomatal movement
GO:0010183	P	pollen tube guidance
GO:0010214	P	seed coat development
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010262	P	somatic embryogenesis
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032465	P	regulation of cytokinesis
GO:0032875	P	regulation of DNA endoreduplication
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045697	P	regulation of synergid differentiation
GO:0045926	P	negative regulation of growth
GO:0045995	P	regulation of embryonic development
GO:0048235	P	pollen sperm cell differentiation
GO:0048364	P	root development
GO:0048658	P	anther wall tapetum development
GO:0052545	P	callose localization
GO:0055089	P	fatty acid homeostasis
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1904095	P	negative regulation of endosperm development
GO:2000692	P	negative regulation of seed maturation
GO:2001280	P	positive regulation of unsaturated fatty acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network