result

Gene information

Detail information of AfisC6G06054

Location

Gene	Chr	Start	End	Strand
AfisC6G06054	chr6	1070291586	1070293951	+

Sequences

CDS

Protein

Gene

>AfisC6G06054
ATGGGAGACAGGCCTGCACAATACATGTGGGTATGCATATTTTATGGCAATCATGGCATGTGGCCGATAAAAATTTAAGGAATAATTATTTTATAGCGGAGCAATACTAGGGATTAATGGTTCCCATGATGGAAAGCAAGGCATGTCTGACAAATTGGCATACAATCCACAAGATCGATTAGAAAGTGGTGTTATACTTAGAACATATGTGACTGCCATCATGACCATGTCCATAAGCTCATCCATATGCATGTAATACAACAAGATAATTCTAAGGTTAGTTCTTTTTACTTTTTATCATTAAACTATTTGTAAATATGTATTTTCTTGTTTTCTTTTGGGAATGACAAGGAAGTAGTTATGGAATGGTATGATAAATACTGATGTTAATGTGTATTTGTTGTTGGTCGTAATGCAGATGGCATGTTGAGATGCCTGCACTAACAGAGCAGTCCATCTTTATACCGTCTAATGTTGGCCTTATGATGGTTATGTTCAGTTGGGGTCAATTCCATCTTCTGTTGTTCCCTTCATTATTTCTTTTGTCATTGCACCACTCTTCTTCGAATCACTCATTAACCAAATTACATATCAATAGCAAAATAGTACAGCGTTTATTATTTACATGCCGTTGATATTTTTTTTCCTTTTCACTTTCTTACCGCAAAAGCTAAGATAGTTATTTTTACTCAGTTGACAAATACGCGCTCTTCAATTTTTAATTCTGGCATCCATTTTCTAAATAGATACACTAGTAAATGATGTACTACTACTCTTATTGGATATGGTATACCAAATGAAATAAATAAGTTTTAGATCAATACTAGTAAGTTACAGATATTTACATTATAAATGTGGATAACATATACATAATAACGATTAAATTTAACCTAATCAAGCAAAATAGAGGATAGAGTACTTCGATTTTCGCTTCAGCGAGGTTTAACCTTTTTCAATTTATCTAAATTTTTATGATTTTTCAATCATATACTTCGTAAATTTGTTCCAAAGATAAATTTAGGTTTTTTCTTTTCTTTTCTTTTTCTAATCAATTCGAAACTTGATTTGTGTTCTAGTTTATAGAGTTTATAGGATGTTTTAGTCAACTACTTCTGTTTTTTTGTATTGTGATGCAGTGTTTTCTTGATACTTTTCAAGTAGTTTAGGTTATGATACTATACACTATGATTTACTTTGCAGGTCTCAGCAAGTAAAACAAAGATTTATATGGTCCTTGAATACGTAGATGAAGGCGAATTATTTGACAAAATTGTAACTTACTAAGTTCATTTAATTACAAATTGCATTAAGTATCAAACTTAGAATTAGCAAGAAAAATTACACTAATTTCAACAGGAATCTAAAGGATGAATTTCATAATGCGAAGGTCGGAGGCTTTTCCGGCAGTTAATTGATGCTATAAGCTATTGCCACGATAGAGGTGTCTACCATCGAGACTTGAAAGTATAATAACACGTCTAATAATAAAATAACTCCATCCACATCCAAATATACAATTGGTTGCATTTTCCATAATCATATTTCTATTGCAACTTGAAAATGTTCTTATTGATGCAAATGGGAATATTAAGATAATGGATTTTGGTCTCTGTGCATTGCCTCAGCATCGTGGTGTATACTACTAACATTATATTTATTCACACATGCACAAACGCACGTGCACGCGTGTATGTGTTAAATTTTCATAAATTGTGTTATGTGCATTTTATATCTCTATTATATATTTCAGACTGATGGATTGTTGCACACAACTGCCATAAGCCCAAATTACATTGCTTCAGAGGTAAAAGGTTAATTCAATTTTCAATGTTATCCAGTTTCATTTTCTCTTTATATTTTGCTATAAATAGTAAAAAAAAATTGTTTTTTATTTCATTTGTAGGTGCTTACAAATAGAGGATATGATGGTGCTATGTCCGATATATGGTCATGTGGCGTAATTCTCTGCATCATACTTAAAGGATCTCTTCCATTCGATGATAGAAACCTTGATGTTCTTTATCAAAAGGTACATTTTGTAAAGTAGTATGATCGTTTCATCAATTACTTGCATACTTAATCGACTATTTTAACATTCATTTTGAAATTTGGTAAAGATTTTCAAGGGAGACTTCCAGATTCCTAAATGGCTATATCGTGAAGCACAGACCCTAATTCGAAAGATTCTTGACCCCAAACCTAAAACTCGAATAAATGTTGAAAGGATTAATGCGGATAATTGGTTTAAACAATACTACACTCTAGTCACTCCATATGATGACGACGACGACGACGATGAAGTTGATGATACTACTAATGATGCAGTAATCAAAATGGTATATTGTTATTCTATGCATGTTCTATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274635.1	3.5e-32	CBL-interacting protein kinase 1-like
Swissprot	Q9LGV5.1	2.0e-29	OsCIPK01
trEMBL	A0A8T3BEN5	1.6e-31	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G48260.1	60.00	1e-31	131	CIPK17;SnRK3.21	CBL-interacting protein kinase 17

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06054	AT1G48260.1	100	39	1	11	110	182	280	60.00	1e-31	131
AfisC6G06054	AT3G17510.1	94	33	0	11	104	191	284	64.89	3e-31	130
AfisC6G06054	AT3G17510.2	94	33	0	11	104	111	204	64.89	5e-30	126

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	11	95	39.7	3.1e-10

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003729	F	mRNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005739	C	mitochondrion
GO:0005773	C	vacuole
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005516	F	calmodulin binding
GO:0005524	F	ATP binding
GO:0006396	P	RNA processing
GO:0007584	P	response to nutrient
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009506	C	plasmodesma
GO:0009536	C	plastid
GO:0009749	P	response to glucose
GO:0010107	P	potassium ion import
GO:0010118	P	stomatal movement
GO:0010150	P	leaf senescence
GO:0010167	P	response to nitrate
GO:0010540	P	basipetal auxin transport
GO:0016607	C	nuclear speck
GO:0018105	P	peptidyl-serine phosphorylation
GO:0018107	P	peptidyl-threonine phosphorylation
GO:0035061	C	interchromatin granule
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network