result

Gene information

Detail information of AfisC6G06123

Location

Gene	Chr	Start	End	Strand
AfisC6G06123	chr6	1080938339	1080942696	+

Sequences

CDS

>AfisC6G06123
ATGGCGGAATCCTTAAGCAGTCTTCCTCCTTCAAAACGATTCAAGCTTCTCAATCAGCAGCAGCAACCTTCACCTTCGTCTTCTTCCTCCGATCCTCTCCCTCCTCCTTGCCTTCCCGCCAAAAAACGCGTCTGGGCTCCACCTCCTCATTCTCCACTCAAACCCAAACTAAACCATGTAACAGATCTCATTCTCGATCTCAATCAACCCCCCGTTGAAACGAAACCGAGATCCCGAAAAGTAAGATTCGATCTTGGTGAAGAAACCCGTTCAAAATCCGAAACCCTAGAAGGAGGATCCAGCGTGGAAGAGGAAAAAATCCACCAAAACCGGAAATTCATCACAGAAACCTCCATAAAATCAGGCATCCAGCAAAAAAGCTCAGATCTTGCTGAAGAAAAAGACGAGCAGCAGACTGAATATATCATTTCGGAAACTGAAGAAGTAGAAGAAGATGGAATCATATGTGCAGTATGTAACATAACGGACGCTGATCCAGTAAACCCAATAGTCTTCTGCGATGGCTGTGACTTACAAGTCCATGCCTTCTGCTATGGAAACCCTTTAATCAAATCGATTCCTACAGGAGATTGGTTCTGCGAGCAATGCTTGAATTCAACTTCGAAGCAAAACTGCTGTTTATGTTTCAAAGAAGGTGGTGCAGTGAAAGCTACAGTGGATGAGAAGTGGGCACATATTGTATGTGCACTATATGTACCAGAAGTGTATTTTAAGGATCCTGAAGGGAGGGAAATGATTGTCTGTGATATGGTTCCAATGGAGAAGAGAAGAGTGAAGTGTTATTTGTGTGGGTCCAAATGTGGGTGTGGAATTCGGTGTGCAGAGGTAGGTTGTGGGTTGGAGTTTCATGCTAGTTGTGGAGTCGGTAAAGGGTTGAGTTTGGAGTTTATGGTAGGCAGAGGTGGTGGTGTCGTTGCTGGGTTTTGTGATGTGCATTCTAAGATTTGGGTGAAGCAACAGCATTCTGGGAAGTTCAAGATTGTGGCGAGTGAAAAAATCTGA

Protein

Gene

>AfisC6G06123
CTCCACAAAAATTAGAGGGAAATCAAAAATCCCAAATCCCAAATCCCGAATTCGTAATCCTGAAAGCAAATTCAAACTTCACCCTCCAAATTAATTTCCAAAATACAGATTCAGATACCATAATATTTCTCCAATTAGTATTTTCCCTCCAAATTTCCATCATGTTTCCCCCCTTTATCTTCCGCTTCCATCTCGTCCTCTTCCCTCACCCTAATTTCAATGGCGGAATCCTTAAGCAGTCTTCCTCCTTCAAAACGATTCAAGCTTCTCAATCAGCAGCAGCAACCTTCACCTTCGTCTTCTTCCTCCGATCCTCTCCCTCCTCCTTGCCTTCCCGCCAAAAAACGCGTCTGGGCTCCACCTCCTCATTCTCCACTCAAACCCAAACTAAACCATGTAACAGATCTCATTCTCGATCTCAATCAACCCCCCGTTGAAACGAAACCGAGATCCCGAAAAGTAAGATTCGATCTTGGTGAAGAAACCCGTTCAAAATCCGAAACCCTAGAAGGAGGATCCAGCGTGGAAGAGGAAAAAATCCACCAAAACCGGAAATTCATCACAGAAACCTCCATAAAATCAGGCATCCAGCAAAAAAGCTCAGATCTTGCTGAAGAAAAAGACGAGCAGCAGACTGAATATATCATTTCGGAAACTGAAGAAGTAGAAGAAGATGGAATCATATGTGCAGTATGTAACATAACGGACGCTGATCCAGTAAACCCAATAGTCTTCTGCGATGGCTGTGACTTACAAGTCCATGCCTTCTGCTATGGAAACCCTTTAATCAAATCGATTCCTACAGGAGATTGGTTCTGCGAGCAATGCTTGAATTCAACTTCGAAGCAAAACTGCTGTTTATGTTTCAAAGAAGGTGGTGCAGTGAAAGCTACAGTGGATGAGAAGTGGGCACATATTGTATGTGCACTATATGTACCAGAAGTGTATTTTAAGGATCCTGAAGGGAGGGAAATGATTGTCTGTGATATGGTTCCAATGGAGAAGAGAAGAGTGAAGTGTTATTTGTGTGGGTCCAAATGTGGGTGTGGAATTCGGTGTGCAGAGGTAGGTTGTGGGTTGGAGTTTCATGCTAGTTGTGGAGTCGGTAAAGGGTTGAGTTTGGAGTTTATGGTAGGCAGAGGTGGTGGTGTCGTTGCTGGGTTTTGTGATGTGCATTCTAAGATTTGGGTGAAGGTAATCTCTTTTTTTGAATGTCACATGATCTTGTTTACAGTTAATATTTCAAGCTTTTGTTAAATGCATAAACACATCGTAGGAAAATTATGGATTGATTTAAGATACGAGTTCAAGGTTGAATGTCATATTTCACTCCTTTGTAACTGCGTACATCCAAATTTACAATGCCCCTAGTTCACAGTTATAACTGAACATTATGTTTGTATATGCGTTCCGCAAAAGTGACAAATATGTTTGTCTGAAATTACATGTATATTTGGTAGAAGATAACTTCAATTTCTAATTCTAGTAACTCTTGCTTTAATTTTTCAAATTGACAATTTAAGCTTTTACTAAATATACATACACTGCAAGTTAAATGAAAAAGTTCTAAACTGAAAGCTGGGCATAAATGAGAACAATATGGATTTTGCTTATGACTCAATCAATTCAAAGTTTAATTCACCATTTCTTTTTAGCAATAAATGTTATACCTCACTTTGATAACTGACGTAGTTTAAATTGCAAGTGTACGCTTATTACATTTCTCTATGAAAAAATTGTTCAAAATTCAAACTTACAATTGAACTTCTTATACTTATTTATATACTTTATGCAAAGCTATTTAGAATCGTACAAATATTTTTAACCAAATGTATGTGTTTTCCGGGTTCTTGTATCATATCACTTGCAAACCTTATGTGGCGAGCATCTATTTCTTATTTGTAAGAAAAGTGTTATAAAAATTTAGAAAGCATAGCATCTCCTGTTTTCAATATGGTTGTATGCATAGGTCTGATATGTTTATCTAAAAGGCACTAGTATCAATGACTTAAAAATATAAAATTTTCACTTGCCACCTTGATCTTAGCTTATTTTGTGCTCCCTAGTATAATTGGGTAGGTGTTTTACACTAATAGTAATTCTATGTATTATTACCGAACCATTGATAACAAAAAATGAACAAAATTGATATGTCAATACTATTGGTAGTGTAACAGTGTATTTATTGATATTTTCCGTGTATTCAATTTTAATTAAATTTTAAAACCATATACAGTGGTAATTTTATAGATCATTTCATATATTTGTTTTATTAACCTTAACTCAACTATTATTTTACATGCAACACATATTTTGAGATGGCATTTGATTTATTTTATGGTTTTATAGTTTTGTTAATGTTTCAATTCTTTCTTCATTAACTTTACTCTTTTTTTGTTAGATTTTAGTGTGTTTCTAAGTTATGTATTTTGAATCAATTTAAAATTTTCAACATTCACTAAATATGTGAATATAATAAAACAAATATGAGTAAGATAATTTTGGGTAATTTGTCAACAAAAAACAACGGAGTTGCAAAAAACTATATTAGAGATTAAATCTAATTGTCAAAATGGAATACATTTATGATATTCTAATAAATGTTATGAGAGGTCATTACAAAACAGAGTCTTCTTATAACATAAAAATACAATGGAGACATTGGGAATCATCAGATATTTTTAAAATGATGGAGAACACATGAAATCATAAAGAGTAAAATAATAATTTATCTTATAACATATATCATTTTGGAAATATCTTTTATAACATAGTTTAATTTGAATCAATTCCCTTAAAAAATTTCTCTTGTTAACCAAAACTTGACTTGTTTTAACAACCTACAAATCTATTATACGTGAAATACCATTTTGTCCAAACTTACTGAGTGAAATAGAAAATGCAGTTATTTTCCGTATAAAACGACACACAATTAACATTTTACTTCCCCGTATAAAACTACGCACAATTAGCATTTTACTTCCCTTAATTCAACAAAACTCAAGAATTACATAATTTATGTAATTTAAATTTGGGGATTAGATGTACTATTCTAATTTATGTTGAATCTTTGATTTTGAATTTAAATCTCTAACCTAACATGGTTGATCAAGTTATTTGGCACTTTAATGGTATTTTGTTTTTTAATAGTAAGAGCATTACCAGCAACGAAAGCAGATCATTTGATAAAAAAAAATTTATTTTTCGAATTACTTATAAATATTCGTCCCAATAATACACAAGTTTATCCAACATTTCAAATTTTGGATAAAAATGTGTGTTTGCTATTACAATTTATATGTGGAATATTTAATTGTGAGCACATATTTATTTGATATTATAAATATCATATAAGAAAGCAACCTTGGGTTTACTTTGGTTGGTCCAAATGGATTAGCCAAAATTTCATTTGAGGTGTTTCATTGATTTATCCACCCTTTATTGGCAATACTTATAACTAGGTCTGTTAATGGGCTTGGTTTGGTCCGGGTATCATAAAACCAAACTCAAATCCGATTATAATAATTAAAATCCGAGTTCGGTCTAAATTCGTAGTGTATTTCAAACCAATACTCGAGTTCGGCCTGTCGAGCTTTTTAAGTTCGTTGGGTAATACATGTATATACAACTCAGAACATTTATGGTATTTGCAACTTTGGTAAAATTTGTATGCAAATAATTCTAACATATAAATTGGACGACGATGTAGTCAAGTTCACAGCAAAAGTATGCATAAATATATACACGTTAACAAATAAAATGGTAAACAAATAACATACACACTCATGTTTTAATATGATGGAAAACTAATAGTCGAGTCGGGTTTTAACCGAGTTGGGTTTTGATAAAACTGTACCCGATCTTGATAGTAACCGGGTCGAGCTTGGATTGGGTTTGGATAGTAAAAGGTAAAATCCATACTCGCATTAATACAGATCGGATTTGGATCGAAACCCGTACCATTGACCGGCCTAGTTATAACTGTTACCATAATAGTTCTATTGCCTTGTTAATTGAAATCTTTTTCAAGTAGAATTTAGTATATTTGAGCTGTAAATTTTGATTTGCTTCCTGTTATATTTCTTCCTTTTTAATGCAGCAACAGCATTCTGGGAAGTTCAAGATTGTGGCGAGTGAAAAAATCTGAAGAGAATTTTAAAATAAAGAGCAGCTTCTAATGATTTATCAACCATAGGTTTATCTTTTTTTATTGACTCTTCCTTTCTTCCTTTTGTGAACATGTTTCAAATAAAATTTTCCTTTCATTTGGTGTATTGTCTTTTATTTTGCTACGGACATTTGGACTAATTTGTAGTTCTTAGTTTAATTACGTAATTGAAAGCCTAATTATTATTAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_024159174.1	2.0e-68	protein Jade-1-like
Swissprot	Q7ZVP1.1	6.3e-27	PHD finger protein 16
trEMBL	A0A2P6Q9K7	1.4e-68	Putative chromatin regulator PHD family

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G14740.2	46.33	4e-70	261		RING/FYVE/PHD zinc finger superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06123	AT3G14740.2	313	120	8	37	339	66	340	46.33	4e-70	261
AfisC6G06123	AT3G14740.1	313	120	9	37	339	66	338	45.69	1e-67	253
AfisC6G06123	AT2G31650.1	222	147	6	85	303	547	760	28.83	4e-18	89.4

Ortholog group

Species	Genes
Allium cepa	g285365.t1
Allium fistulosum	AfisC6G06123
Allium sativum
Arabidopsis thaliana	AT3G14740.1; AT3G14740.2
Oryza sativa	LOC_Os01g08820.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00628.26	PHD	Domain	155	205	42.9	3.1e-11
PF13832.3	zf-HC5HC2H_2	Domain	211	304	77.9	5.3e-22

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000792	C	heterochromatin
GO:0001709	P	cell fate determination
GO:0003002	P	regionalization
GO:0016055	P	Wnt signaling pathway
GO:0005737	C	cytoplasm
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006928	P	movement of cell or subcellular component
GO:0006950	P	response to stress
GO:0007173	P	epidermal growth factor receptor signaling pathway
GO:0007476	P	imaginal disc-derived wing morphogenesis
GO:0009605	P	response to external stimulus
GO:0009966	P	regulation of signal transduction
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0030030	P	cell projection organization
GO:0030855	P	epithelial cell differentiation
GO:0031324	P	negative regulation of cellular metabolic process
GO:0032259	P	methylation
GO:0032452	F	histone demethylase activity
GO:0040011	P	locomotion
GO:0042063	P	gliogenesis
GO:0043966	P	histone H3 acetylation
GO:0043967	P	histone H4 acetylation
GO:0044710	P	single-organism metabolic process
GO:0045595	P	regulation of cell differentiation
GO:0048666	P	neuron development
GO:0048749	P	compound eye development
GO:0048863	P	stem cell differentiation
GO:0051179	P	localization
GO:0051239	P	regulation of multicellular organismal process
GO:0070776	C	MOZ/MORF histone acetyltransferase complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network