Detail information of AfisC6G06183


Location
GeneChrStartEndStrand
AfisC6G06183chr610910427441091072722+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020276718.12.4e-166increased DNA methylation 1-like isoform X1
SwissprotF4IXE7.11.3e-71Repressor of silencing 4
trEMBLA0A5P1EA011.7e-166PHD-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G58610.138.594e-91 333PHD finger transcription factor, putative

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag370605.t1
Allium fistulosumAfisC6G06183
Allium sativumAsa8G01152.1
Arabidopsis thalianaAT5G63900.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF16135.2JasFamily35742959.32.9e-16
PF00628.26PHDDomain47051130.13e-07

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003690Fdouble-stranded DNA binding
GO:0005634Cnucleus
GO:0006306PDNA methylation
GO:0006351Ptranscription, DNA-templated
GO:0010629Pnegative regulation of gene expression
GO:0016787Fhydrolase activity
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0032991Cmacromolecular complex
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043966Phistone H3 acetylation
GO:0044446Cintracellular organelle part
GO:0044763Psingle-organism cellular process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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