result

Gene information

Detail information of AfisC6G06191

Location

Gene	Chr	Start	End	Strand
AfisC6G06191	chr6	1091792182	1091793831	-

Sequences

CDS

Protein

Gene

>AfisC6G06191
CTTCCACGTGTCCCACCTACGTAAAACGACATCAATCCATCCCCACCGTTCATCCCTCACCTCCTTCCTCCATCCAACGTTTCGCATTCCATCCGTTTAATAAAGAAGCTCCACCGCCTTATAAATTGCTAACTCCGTCAGTTACTTCATTATTCCTCTTCTATTTAAATCCTCTTCTTCCCACCTTTCCTTTTCACTTCCAGCTGCCTCTCCGATTTCAAACTCTCACTGCCACCATGATGATGAACCAGAAGCCATCGATTTACATCCCTACGGCTTATCTCGACGACATCGAGTACTTCTACGACTCCGACGATGAGTCGTCCTTGGATCTGACCAGCACCGACGAGTTCCGGATGTACGAGTTCAAGATCCGCCGCTGCGGACGCGCGCGCTCACATGACTGGACAGAGTGCCCCTTCGCTCATCCCGGCGAGAAGGCGAAACGGAGAGATCCGAGGAAGTTTCACTACTCAGGTACCTCCTGCCCTGATTTCCGTAAAGGCAACTGCAAGCGTGGCGATTCGTGCGACATGTCGCATGGAGTGTTTGAATGCTGGCTCCATCCTGCTAGGTACAGGACTCAGCCTTGCAAGGACGGCGTAGCGTGTAGAAGAAGGGTTTGCTTCTTCGCGCATACGCCGGAGCAGTTAAGGGTCCTGCCTACGAGTCCGAAGACGGTGTTGGAAGGCTACGACGGATCGCCGATGAGGAGGGCGGTCACGTCCCCGGATAGTTCGCCGTTGCTGTCTCCAGTGATTGCTGGTTTTCGGAGGTTGCAGCTCGATAAAGTGAAATCGATGTCGAGCTCGTGTCCGAGTTCGAGCTATTTAGGGATGAGGTTCGGCGATGCGTTCTGTAGCGTGCCGACCACCCCTACAGCGGGTGATTACGATGAGAACGAGGGGTTTGTTGAGAGAGTCGAGAGCGGGAGGGCTTTGAGGATGAAGTTGTACGAGAGGTTGAGCAAGGAGAACTGTACCGTGGAGAAGAAGGATCCTGATGCAGATCCTGTTTGGTTTAATTAAGCAGAAACCGGGTGTGGTTTTTGTAAATAGTAAGTGGATTTTGGAGGTAAGGAGTTGATTACTGTTATTGTATGAAGCTTTGTTTTGTCGATAGAGATGAAGATTTTGAGCTGCTGAGGAATTAATGGTGGCTTTTTAATTATTATGAATACTTTATTATTAAGGATTATGTTATGATGATTCTAGAAAAGATAATGTATTAGGTTTTTAATTATGTTGATGTCTGGATTGTTTGCCACTTCCGTTTGTTTGATTTGAATTGTAATTACGTGAGGGTTGAAATTTCATTTCAATTTAGTTTGTGCAAATCCTGGATGTGGAAGGAGTTTACGATAATTTTGCGACGGATGATGAGTGTTAGAAGTTCGTACTGGATGTTGGCAGAATTATATGGCAATATAAAGCAACCATCTTTTCCATTTAATGCTTTGTCGTCTTCTTCTTTGAAGGAAGGGAAATTTAAAATTTTGTAACCTAGTCGTATACGTATTTATGGTTGCGTCGGTAGATCTATGGATTGTTTTATGCGGATTGTGACGATGTTCAAGTGTTGCGTTTTTATTTTTGGTGTGTCGAGGGTTTACTATTTAAGGTTGTTTGGATTCAATTTTACTGTTTGTCG

Functional annotation

Database	accession number	e-value	annotation
nr	QEX51215.1	8.2e-78	zinc finger CCCH domain-containing protein 2-like isoform X1
Swissprot	O82199.1	7.7e-73	Zinc finger CCCH domain-containing protein 20
trEMBL	A0A5J6NB87	5.9e-78	Zinc finger CCCH domain-containing protein 2-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G19810.1	51.25	1e-67	253	AtOZF1;AtTZF2;OZF1;TZF2	CCCH-type zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06191	AT2G19810.1	279	90	5	25	258	65	342	51.25	1e-67	253
AfisC6G06191	AT4G29190.1	291	107	8	10	258	51	341	48.80	1e-66	249
AfisC6G06191	AT2G25900.2	258	99	6	10	247	61	312	51.55	2e-63	239

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0050832	P	defense response to fungus
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0009409	P	response to cold
GO:0009793	P	embryo development ending in seed dormancy
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010187	P	negative regulation of seed germination
GO:0010200	P	response to chitin
GO:0010494	C	cytoplasmic stress granule
GO:0030154	P	cell differentiation
GO:0061157	P	mRNA destabilization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network