result

Gene information

Detail information of AfisC6G06217

Location

Gene	Chr	Start	End	Strand
AfisC6G06217	chr6	1095643486	1095644517	-

Sequences

CDS

Protein

Gene

>AfisC6G06217
CTCACTTTCACTCTCACTCATTATCCCTTTAATAATTTCCAAATGTATCACTATTCAATGGAGGTCTCCGACTACTACTCGGCCACCAAAGACCATTTCGCCGTCGAAGACCTGTTCAACTTCAACGAAGAAGAAACAAACAACAATAACAGCGAAGACAACAACACTGGCTTCGAGGGCATTAATGTCAATTCATCCAGCTCTTCCGTTATCGCCACCGACGTCAGCTCCGGCAGCTCCGTTTCCGCTTACCAACAGCACTTCCCCGCCGACTTCTCCGAACCAGTAATTATAATAGTAGTAACAGTCATTGACATTCATTTTAAATATCATACATAATTCATACGTATATATGCAGGTAGAGGAAGTTGCTGAATTGGAGTGGCTATCGAATTTCATGGAAGACTGCTTCTCGAACAAAGACACTCATCATCATCATCATTATCACCAGCACCATTACCAGTCCCAGGATCCGGCCCATTACAGTTCAGCCTCGAACGCAGTGCCAGCGAAGGCCCGAAGCAAACGGTCGCGGGCCAACCCGGGTAACTGGGCGGCCCGAATCCCGATCCTCCCCACCCAGGAGGACATTCAGGAACAGGTGCAGAACGTGATCGCCACGTGCCAGGAGGGAAGTGGGCGGAGGTGCCTGCATTGCGGAAGCGACAAGACGCCGCAGTGGAGGATGGGCCCGATGGGCCCGAAGACCCTGTGCAATGCGTGTGGAGTCCGGTATAAGTCGGGCCGGTTGGTGCCTGAGTACCGGCCCGCTGCCAGCCCAACTTTCGTGGTGTCCGAGCATTCGAACTCTCATAGGAAGGTGGTTGAATTGAGGAGGCAGAAGGAGATGCAGAAGCAGCAAAAGCAGCACCAGAACATGTTGTTTTGGTCCTAATGATTTGATTAAGAGAATTTTAATCTAATTTTTTTAGTCTGGGTAGTGATGTAGTACTAAGCATTTGTGTTCTGCATTTTCCATTCTCTATTTTTTGTAATTGGAAAACTTATTGTTAATTATTATTTTTTATTATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259432.1	1.7e-59	GATA transcription factor 9-like, partial
Swissprot	O82632.1	2.5e-44	GATA transcription factor 9
trEMBL	A0A5A7PZ65	3.0e-50	GATA transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32890.1	42.86	1e-54	209	GATA9	GATA transcription factor 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06217	AT4G32890.1	280	120	8	11	257	10	282	42.86	1e-54	209
AfisC6G06217	AT5G25830.1	284	107	7	19	247	14	290	40.49	1e-45	179
AfisC6G06217	AT2G45050.1	213	77	5	68	253	59	256	44.13	4e-40	161

Ortholog group

Species	Genes
Allium cepa	g207213.t1
Allium fistulosum	AfisC6G06217
Allium sativum	Asa8G01113.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	178	212	57.0	9.7e-16

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009845	P	seed germination
GO:0030154	P	cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network