result

Gene information

Detail information of AfisC6G06302

Location

Gene	Chr	Start	End	Strand
AfisC6G06302	chr6	1108726550	1108730323	-

Sequences

CDS

>AfisC6G06302
ATGAAAACAACGTTGGGTTCTTCCAGATCATCAAGAGGAAAGAAAAAGAAATGCTTAAACGACCAAGGAAAAGGAAACGATGAGCATGAAGGCAAATCTGTTAGTGAGAATTTAGGTACTGTAACCGAAGAAGATCATGTTGGGAATGAAAATCCCTGTAAAAAGCCAAAACATTTCCATCGTACTCGTCATTCCCAAGAGCAGATTCAAGCCCTTGAAGCTCTATTTAAGGAATGTCCTCATCCCGATGAGAAACAAAGGATCGAGCTTGGTAGGAAAATTTCCTTAGACCAAATACAAATTAAATTTTGGTTCCAGAATCGCCGCTCACAGCTGAAGAGACAAATTGAGGATTATGAAACTACACTCCTTAAAGAAGAGAATGAAAGGCTTAGCATTGAAAGAATTGCCGTAAAAAATGCAAAGGCAAACCCCATTTGTGGAAAATGTGGTGGTCGTCTGAAACTTAAAGATCCATCCACAGAAGAACTAAGTCTTATGATTCAAAATGCACGACTAAAATACGAATTTAACAAAAATCGTGCACTATGTTCAAAGTTTATTGACCCACTCACTGTTGATCCAAAACCAAGCAATACTTCTGAATCTGTTGATCCAAAACACCCTTTATTGGATCTTGCTGAGAAGGCAAAGGAAGAGCTTCTCAAAATGGTGCAAATGGGCGAGCCTTTATGGATTAAGGATATTGGCAGCAGGAAAGAGAAACTGAATTATGAGACTTACAAGCAAATTTTTCCTCGGAGCATTGGAACGAAGCCTGCTGAGTTTGTTTATGAGGCCACTAGAGATATGGGTACAGTGACCATCAGTTGCATGGAACTCGTCGAAATTCTCATGAATGCTAAACAATGGGCTGAAATGTTTCCAAGCATGATCGCAAGTGCTACAGTCATCGACATGATCACTGGTGGTGCTGCTGGGACTAGAGATGGTGCACTTCAGCTGATGAATGCGGAGTTTCAAATCCTTTCACCAGTCGTTCCTATTCGTGATGTTAGCTTTCTTAGATATTCTAAGAAGCTTGGAGAAGGAGTTTGGGTGGTGGTTGATGTGTCTGTAAATGGAGAATTTCAGTCTGCCATCAACTGTAGGAGACTTCCCTCAGGTGTTCTTATTCAAGATACGCCTAATGGTTACTCCAAGGTCACCTGGGTAGAGCACACAGAGTACGATGAAAAAGGAGTTCACGAGCTCTTTCATCCAATGCTCCGCTCAGGAATGGGACTTGGAGCCCAATGTTGGCTTTCTGCTCTTCAGAGACGCTGGGAAGGCCTAGGCTTGACTGTACTACTCCCCCCTCTGCATCCTTACGAAAATGCAGTAATTACCGGTGTTGGGAAGAGAAACATGGTAAAGCTAGCACAGCGCATGGTGGACAGCTTCTGTGCTAGCATGAATGAATCACGATCGCGCAAATGGACCAAATTTATAGGAAACACGAACATAGGTGGAGCTTTCAAGGTGATGTCCAAGAAAAATGTCAATGTCGTAGGTGAGCCTGAAGGCGTCATAGTTAGTGCTGCAAGGTCGGTTTGGCTCCAGGCGTCGCCCCAGAAGCTGTTTAGTTTCTTGACAGACTTGAGCATGAGGAGTATGTGGGATATTTTATGCAATGGGAAGCTAGTGCATGAAACAATCCACATTGGCAAGGGTCAGGACCAGGGTAATGCCATCTCCTTCCTCCATCAGGCGGTGGGTGAAAATGGAGGCAACGGCAGGCTGATAATACAAGAGACGTGCACAGATGCATCGGGCTCAATGGTGGTGTATGCTCCGGTGGATGGTAATGCCATTCTACAAGTAATGAATGGTGGCGATTTGTCTCATATCCCAGTTCTTCCTTGTGGATTCTCGATTCATCCAGATGGGACGTCATACCAGAACGATACCGATGGATCTCTTCTTACTGTAGCTTTTCAGCTACTTGGTAGTGCACTAGAGGCAGAAACAGTCGGTTCAATGTCTATGGCTGAAAGGATGAACAAAATTATAGTGGATACCATTTTAAGCATAGAGGGGCTGCTTAAATTGCATCGCTAG

Protein

Gene

>AfisC6G06302
ATGAAAACAACGTTGGGTTCTTCCAGATCATCAAGAGGAAAGGTCTTTTTTTAACGTTGTGTACTTCTAGAGATGTGTACTTTTGAAAAAGATTTGTTTTTTATGCAATTATAGTTGATTTTAGAGATGGATTTTTAATTTCAATTGCACCACCTTGTTTTGTGTAGAAAAAGAAATGCTTAAACGACCAAGGAAAAGGAAACGATGAGCATGAAGGCAAATCTGTTAGTGAGAATTTAGGTACTGTAACCGAAGAAGATCATGTTGGGAATGAAAATCCCTGTAAAAAGCCAAAACATTTCCATCGTACTCGTCATTCCCAAGAGCAGATTCAAGCCCTTGAAGCGTAAAATTTAGCCTTTTTTTAGTTTTTCTTTCATATATATCAGTTGCATGCACTTTCCCTTTTCTAGTCGATGTATAATCATCGACTTTATGCAGTCTATTTAAGGAATGTCCTCATCCCGATGAGAAACAAAGGATCGAGCTTGGTAGGAAAATTTCCTTAGACCAAATACAAATTAAATTTTGGTTCCAGAATCGCCGCTCACAGCTGAAGGTAACAATTAATCGCGTCGACCTTGTAAAAATAAATATGTTTAATGTTGTCATGTTTAGCATGTCTAAAATATAGTTGATATTAATAGAGACAAATTGAGGATTATGAAACTACACTCCTTAAAGAAGAGAATGAAAGGCTTAGCATTGAAAGAATTGCCGTAAAAAATGCAAAGGCAAACCCCATTTGTGGAAAATGTGGTGGTCGTCTGAAACTTAAAGATCCATCCACAGAAGAACTAAGTCTTATGATTCAAAATGCACGACTAAAATACGAATTTAACAAAAATCGTGCACTATGTTCAAAGTTTATTGACCCACTCACTGTTGATCCAAAACCAAGCAATACTTCTGAATCTGTTGATCCAAAACACCCTTTATTGGATCTTGCTGAGAAGGCAAAGGAAGAGCTTCTCAAAATGGTGCAAATGGGCGAGCCTTTATGGATTAAGGATATTGGCAGCAGGAAAGAGAAACTGAATTATGAGACTTACAAGCAAATTTTTCCTCGGAGCATTGGAACGAAGCCTGCTGAGTTTGTTTATGAGGCCACTAGAGATATGGGTACAGTGACCATCAGTTGCATGGAACTCGTCGAAATTCTCATGAATGCTGTAAGTTGAATTTGCTTTATTTTTTCTTTTTCTTTCAAGTTTATTATTTTGTATGATGTAGTTTATAGCGGACGTAATTTAATTATTTCAGAAACAATGGGCTGAAATGTTTCCAAGCATGATCGCAAGTGCTACAGTCATCGACATGATCACTGGTGGTGCTGCTGGGACTAGAGATGGTGCACTTCAGCTGGTGATCAGTTTATTCAAACTATTTTATTTTTTTCCTCGAAGCCTAGTATTTAACCCAATTTTTCCTGAACTTTTTAAGGATATATGATTGTCTTATACATCTGGATACTGTATTCTTTTTAGATGAATGCGGAGTTTCAAATCCTTTCACCAGTCGTTCCTATTCGTGATGTTAGCTTTCTTAGATATTCTAAGAAGCTTGGAGAAGGAGTTTGGGTGGTGGTTGATGTGTCTGTAAATGGAGAATTTCAGTCTGCCATCAACTGTAGGAGACTTCCCTCAGGTGTTCTTATTCAAGATACGCCTAATGGTTACTCCAAGGTATATTAATTGTTTATTGGCGATATACATGCATCACTGCTTTAGGGATTCTTTCGCTGTTTATCAATGGAAATGTGTTAAATGTAGAGTTCATGTTTTGTCTAGGAAGTTCTTCTGTTGAAGATTACTGGATAAAACTATTATTTCCCTTGATACCTGGTAGAAATCATTATTTCTATGCCATGTTTGGATGTTGACCTACTCTTTGAATTCAGTGTCATTTACAATGAAATTTAATGCAACCTACTACATATATTAATCCAGCTACCACCATTCAGTTTACATCAATATTTTCTGTTAATTTCATACAACTTATTGAATTATTCAGAAGGAGCTCTTGGTTTGGGAGATTACAGGCTATGTGTCTGACTCCCCATGATCAATTGAATATGCTTTGAAAATAACTCTTTTTTCTAAAAGATAACCAAGAAGTAGACATTAAAGCTGGCCAATAATTATTGTAGACAAATATTGAAATGCTTTATCTGAATCAAAACTTCATTGACATTGCATGAATGCCTACTTCCAATTAATATTTTTTTAGTACTTTAATACCGTTCTTCTCTATAAGAGATCAATCTTACATTCTACTATATTCTATTCTTTAATGTCATTCCTAGCTAACACTATTATTTTGTTCTCTAAAAACATTCATAGAAAACTGTCAAGATCACCTACCTGCTAATTTGTCAATGATACCAAACTAGTGTAAATTAAGCGTGGCCCCCTCTTTAGTAAGAGTATACAATAGGTCATCTCGGTCCAAATTTGTCTGCATTAAAGCCTCGGATTCATCAGCAATGGGCTCCACACTTGCAATATTCTATGTCGACCCGCAAGGGATCTTACGTTGCCATAAAGCTGTGGCATATTTCTATTCAAATTTTTACATGCAATATATTAGGGAGGACAAATGCTAAATATACACAAAAATGGGTATAAGTTGTGACATTGGTCACAGTAGGAAATTAAACGTTCAAATTGTACTAAAAGCTAAGCATAATACTTTAATTTTTTGCAGGTCACCTGGGTAGAGCACACAGAGTACGATGAAAAAGGAGTTCACGAGCTCTTTCATCCAATGCTCCGCTCAGGAATGGGACTTGGAGCCCAATGTTGGCTTTCTGCTCTTCAGAGACGCTGGGAAGGCCTAGGCTTGACTGTACTACTCCCCCCTCTGCATCCTTACGAAAATGCAGGTAATAATTTACAGACCATATCACTGCACATAATTTACCTTTTATTTGCTATCGCATCATTAGTGCTCTAATTTGAATACAGTAATTACCGGTGTTGGGAAGAGAAACATGGTAAAGCTAGCACAGCGCATGGTGGACAGCTTCTGTGCTAGCATGAATGAATCACGATCGCGCAAATGGACCAAATTTATAGGAAACACGAACATAGGTGGAGCTTTCAAGGTGATGTCCAAGAAAAATGTCAATGTCGTAGGTGAGCCTGAAGGCGTCATAGTTAGTGCTGCAAGGTCGGTTTGGCTCCAGGCGTCGCCCCAGAAGCTGTTTAGTTTCTTGACAGACTTGAGCATGAGGAGTATGTGGGATATTTTATGCAATGGGAAGCTAGTGCATGAAACAATCCACATTGGCAAGGGTCAGGACCAGGGTAATGCCATCTCCTTCCTCCATGTAAGTGTACTACTAAGTAGTACAGACTATTGTTAATTATTTACAACAACATACATACATAAATATATACTAATGATGCATGGATACAGCAGGCGGTGGGTGAAAATGGAGGCAACGGCAGGCTGATAATACAAGAGACGTGCACAGATGCATCGGGCTCAATGGTGGTGTATGCTCCGGTGGATGGTAATGCCATTCTACAAGTAATGAATGGTGGCGATTTGTCTCATATCCCAGTTCTTCCTTGTGGATTCTCGATTCATCCAGATGGGACGTCATACCAGAACGATACCGATGGATCTCTTCTTACTGTAGCTTTTCAGCTACTTGGTAGTGCACTAGAGGCAGAAACAGTCGGTTCAATGTCTATGGCTGAAAGGATGAACAAAATTATAGTGGATACCATTTTAAGCATAGAGGGGCTGCTTAAATTGCATCGCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262629.1	8.4e-175	homeobox-leucine zipper protein ROC5-like
Swissprot	Q6EPF0.1	2.7e-154	Protein RICE OUTERMOST CELL-SPECIFIC 5
trEMBL	A0A5P1F9F4	6.1e-175	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00730.1	43.40	3e-161	565	AHDP;ANL2	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06302	AT4G00730.1	705	339	11	27	683	107	799	43.40	3e-161	565
AfisC6G06302	AT3G61150.1	725	345	10	30	682	85	803	41.66	1e-158	556
AfisC6G06302	AT4G04890.1	714	362	14	23	675	29	731	39.22	6e-140	494

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	60	114	61.9	3.2e-17
PF01852.16	START	Domain	213	428	162.6	7.1e-48

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0042335	P	cuticle development
GO:0043481	P	anthocyanin accumulation in tissues in response to UV light
GO:0048497	P	maintenance of floral organ identity
GO:0048765	P	root hair cell differentiation
GO:0048825	P	cotyledon development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network