result

Gene information

Detail information of AfisC6G06502

Location

Gene	Chr	Start	End	Strand
AfisC6G06502	chr6	1135453323	1135454334	-

Sequences

CDS

>AfisC6G06502
ATGAAGGAATTCAGCTACGAGGACATCAAGAACTCCACCAAAAACTTCTCTGTTGATACACTAATCGGAAAAGGAAGCCATGGCCATGTCTACAAAGCCACTCTAAAAGGCAGCAACAAACAAGTAGCAATCAAGAAACCATACGATTCAGACACCTCAAAGCTCAAAACCGAGATTCAAATCTTATCCTCCATTCGCAAACATCCAAACCTTGTCAACGCAGTCGGCGTTTCGCACAATCTTCTTGTTTTAGAGTACATGCCTAATGGCTCTCTATACAACCTACTTCATTCTCCTTCCTCTTTCCCCTTATGCATTTCCGCTCGCTTGGTCATTTCCCTTCAAATCGCAAGCGCGATTTCAAGTCTCCATAACGGTAAAGATTGTAAAATAATACACAGAGATATAAAATCGGAGAACATTCTATTCGATAGTAGATGGAATGCCAGACTGTCGGACTTCAGCCTGGCAGTCGGAGCAGATGATTCGAACCCAAGACCTCTGCCAGCAGGAACGCTGGGCTACATAGACCCAGGCTACACTGACGCCGAGAAGGTGAGTACGAATGTGGACGTTTATAGTTTTGGAGTGTTGTTGCTAGAGATCATGAGTTCGAGGAAGGCGATCGACATGGACTACGATCCTGCTTCGATCGTGACGTGGTCAGTGCCTTTGATAAAGGGAGGAGGAACATTGGATGTTTGCGATCAAAGGGTGGTTTTTGGCGTAGGTGATGAGATGGAGAGAGCGATAGGGAGGGTGTTGAGAATGGCGGGTAGGTGTGTGTGTGTGGATGAGGAGAGAAGGCCGAGTATGCAGGAGGTGGTTAGGGAGTTGGGTGAGGTGGTGAAGAGAGTTTTTGTGGATGGGTGGGTGGTTAGAATTTGGAAGAGATGTATGAAGATGAGGGTGGGAGTAAGGACGAGGAAGATTGTGTGTAGGGATCGTTTGGGTGATGGTGATCGAGATGAGATAGTTGAACATGATGATGAGTTGTTGTAG

Protein

Gene

>AfisC6G06502
CATCTAATAAATGAAGGAATTCAGCTACGAGGACATCAAGAACTCCACCAAAAACTTCTCTGTTGATACACTAATCGGAAAAGGAAGCCATGGCCATGTCTACAAAGCCACTCTAAAAGGCAGCAACAAACAAGTAGCAATCAAGAAACCATACGATTCAGACACCTCAAAGCTCAAAACCGAGATTCAAATCTTATCCTCCATTCGCAAACATCCAAACCTTGTCAACGCAGTCGGCGTTTCGCACAATCTTCTTGTTTTAGAGTACATGCCTAATGGCTCTCTATACAACCTACTTCATTCTCCTTCCTCTTTCCCCTTATGCATTTCCGCTCGCTTGGTCATTTCCCTTCAAATCGCAAGCGCGATTTCAAGTCTCCATAACGGTAAAGATTGTAAAATAATACACAGAGATATAAAATCGGAGAACATTCTATTCGATAGTAGATGGAATGCCAGACTGTCGGACTTCAGCCTGGCAGTCGGAGCAGATGATTCGAACCCAAGACCTCTGCCAGCAGGAACGCTGGGCTACATAGACCCAGGCTACACTGACGCCGAGAAGGTGAGTACGAATGTGGACGTTTATAGTTTTGGAGTGTTGTTGCTAGAGATCATGAGTTCGAGGAAGGCGATCGACATGGACTACGATCCTGCTTCGATCGTGACGTGGTCAGTGCCTTTGATAAAGGGAGGAGGAACATTGGATGTTTGCGATCAAAGGGTGGTTTTTGGCGTAGGTGATGAGATGGAGAGAGCGATAGGGAGGGTGTTGAGAATGGCGGGTAGGTGTGTGTGTGTGGATGAGGAGAGAAGGCCGAGTATGCAGGAGGTGGTTAGGGAGTTGGGTGAGGTGGTGAAGAGAGTTTTTGTGGATGGGTGGGTGGTTAGAATTTGGAAGAGATGTATGAAGATGAGGGTGGGAGTAAGGACGAGGAAGATTGTGTGTAGGGATCGTTTGGGTGATGGTGATCGAGATGAGATAGTTGAACATGATGATGAGTTGTTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008813100.1	5.3e-74	serine/threonine-protein kinase-like protein At5g23170
Swissprot	Q9FMY3.1	1.8e-58	Serine/threonine-protein kinase-like protein At5g23170
trEMBL	A0A8B7D4M0	2.2e-74	serine/threonine-protein kinase-like protein At5g23170

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G23170.1	46.69	8e-59	224		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06502	AT5G23170.1	302	132	8	1	279	1	296	46.69	8e-59	224
AfisC6G06502	AT3G51990.1	315	163	10	1	300	44	351	41.27	9e-56	214
AfisC6G06502	AT1G28390.2	311	157	9	1	291	37	340	40.84	8e-51	197

Ortholog group

Species	Genes
Allium cepa	g307909.t1
Allium fistulosum	AfisC6G06502
Allium sativum	Asa8G00448.1
Arabidopsis thaliana	AT5G23170.1
Oryza sativa	LOC_Os01g16230.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	17	277	129.5	1.2e-37

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0006952	P	defense response
GO:0004674	F	protein serine/threonine kinase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0030139	C	endocytic vesicle
GO:0009786	P	regulation of asymmetric cell division
GO:0009793	P	embryo development ending in seed dormancy
GO:0009986	C	cell surface
GO:0010311	P	lateral root formation
GO:0042803	F	protein homodimerization activity
GO:0046777	P	protein autophosphorylation
GO:0048829	P	root cap development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network