result

Gene information

Detail information of AfisC6G06576

Location

Gene	Chr	Start	End	Strand
AfisC6G06576	chr6	1146900643	1146902886	-

Sequences

CDS

>AfisC6G06576
ATGGTGCAAGACGAAGCATCATCTTCAGTCACTTCATCTCCTCTTCAACATTTTTCGCTAATGTCGCTCTCTCCTTCTACAATAGGTTCTCCTTACTCTCCATGGATCCGTGAACTCAAATCCGATGAACGAGGACTATACTTAATTCACCTCCTTCTAAATTGTGCTAATCATGTCGCTTCGAATAGCTTAGATCATGCAAATGCATTTCTTGATCAGATATCTCTTTTGTCCTCACCCGAAGGAGATACAATGCAGAGAATCGCTTCCTACTTCACAGAAGCACTTGCACATAGAATCCTCCGTGCATGGCGCGGGCTTTATCGTTCTCTTACAGCCACTGCTCATATTCCTCAACCAATCGCTGAGCTAGCTCAAGCTCATAGGCACTTTCTTGATCTTTGCCCCATTTTAAAGCTTTCTTTCATAATATCAAACCAAGCCATTGTAGAAGCCATGGAAGGAGAAAAAATGATTCATGTGATCGATTTCAATGGCACCGACCCTGCCCAATGGGTTGCACTATTACAAGCTTTAAGCACCCGACCCGAAGGCCCACCGCATTTGAGGATCACTAGCGTGAATGAACACAAAGAAATGCTGAACCACATGGCTGTTATATTATCAGAAGAGGCAGAGAAGTTGGACGTACCGTTCCAGTTCAATCCAATCGTTAGTCGCGTAGATTGCCTCGATATAGAGAGTTTGCGTGTCAAAACCGGCGAGGCATTGGCCATAAGTTCTATTTCAAAGTTGCATTCTCTTCTAGCTTGTGAAGAGAAGTCAAAACCATCTCCCATAGGAAAACAAAGCAACATTTCTCAACTACATAGAATGGTGCAAATGGGGCAAGGGACTTTAGGGGAGTTGATGGAGAAAGATCATGCAAATGGCTTCGTACCAAGTCCGGATTCTAGTTCTTCCTCTCCTATCGCATTATGTCCATGTGTTAAGTTGGAGAGTTTCTTGAATTCTCTATGGAGTTTGTCTCCTAAAATAATGGTGGTAACGGAGCAAGAATCCAACCATAACGGAGGCACTCTTAATGAAAGGTTCATCGAAGCTTTGAATTTTTACGCTACGTTGTTCGATTGTTTGGAATCAACGGTTGCTAGGAATTCGGTGGAGAGGTTAAGGGTGGAGAAGATGTTATTTGGAGAGGAAATTAAGAATATTATCTCTTGTGAAGGGTTGGAGAGAAAAGTGAGGCATGAGAAATTGGAAAGGTGGGTGCAAAGGTTCGACACAACGGGATTTGGAAGAGTTCCGTTGAGTTACTTTGCATTGTTGCAAGCTAGAAGAATGATACAAGGGTTCGGATGCGAAGCTTATAAGGTGAAGGAAGAGAATGGTTGTTGCTTCATTTGTTGGCAAGATAGGCCGTTATTTTCGGTTTCGGCATGGAGGTGTAGGAGGTATGATTGA

Protein

Gene

>AfisC6G06576
CTCGTCTACATAAATTCCATATTCGTCCCCTTCGCTAACAGACAGACAGCAAATCGATACAGACAAAAAAACGCTTCGCTTTTGTCGCCTAATGCACCCAAAACACCATTAATTATTCTCTGCTTGCTTTCTTACCTGCTCCTCTTTAAATTCTTTATTTTTATTTCCTTTCAAAATGGCCTTCTGGTTTTACTACTGTTACTAAAGAACAAATTTTCATATCTTGCCATGATTTATTTTGCATCACTTCTTTCATAGAAAGAGAAAGGCTCTGAATAATTACTTACATCTTCTTCTTCCTCAGGTGATTTTTCTTTGGATTTATTGCTCGATTTTATTTATTTATGTGTAGTCCTTTTCCTGCTAAAATTCTAAGTTTCTAACCATCTTCCGATTCTTTTGATTATTTGACAGGTTCCTAATTTCGTTACTTTCATCGTAAAATCTAGCAAATCTGAACAAAATCCATCCTAAAATCTCTCTTTTTCCCTTAAAAATCTCGTCTTTTTTAATACCCATATCTTGTTTTGCCTCATTTGCTCTGCAAACGTATCAAAAACCCATTTTGCTAAAAAGGAAATTTAAAAAATTGTAATGGTGCAAGACGAAGCATCATCTTCAGTCACTTCATCTCCTCTTCAACATTTTTCGCTAATGTCGCTCTCTCCTTCTACAATAGGTTCTCCTTACTCTCCATGGATCCGTGAACTCAAATCCGATGAACGAGGACTATACTTAATTCACCTCCTTCTAAATTGTGCTAATCATGTCGCTTCGAATAGCTTAGATCATGCAAATGCATTTCTTGATCAGATATCTCTTTTGTCCTCACCCGAAGGAGATACAATGCAGAGAATCGCTTCCTACTTCACAGAAGCACTTGCACATAGAATCCTCCGTGCATGGCGCGGGCTTTATCGTTCTCTTACAGCCACTGCTCATATTCCTCAACCAATCGCTGAGCTAGCTCAAGCTCATAGGCACTTTCTTGATCTTTGCCCCATTTTAAAGCTTTCTTTCATAATATCAAACCAAGCCATTGTAGAAGCCATGGAAGGAGAAAAAATGATTCATGTGATCGATTTCAATGGCACCGACCCTGCCCAATGGGTTGCACTATTACAAGCTTTAAGCACCCGACCCGAAGGCCCACCGCATTTGAGGATCACTAGCGTGAATGAACACAAAGAAATGCTGAACCACATGGCTGTTATATTATCAGAAGAGGCAGAGAAGTTGGACGTACCGTTCCAGTTCAATCCAATCGTTAGTCGCGTAGATTGCCTCGATATAGAGAGTTTGCGTGTCAAAACCGGCGAGGCATTGGCCATAAGTTCTATTTCAAAGTTGCATTCTCTTCTAGCTTGTGAAGAGAAGTCAAAACCATCTCCCATAGGAAAACAAAGCAACATTTCTCAACTACATAGAATGGTGCAAATGGGGCAAGGGACTTTAGGGGAGTTGATGGAGAAAGATCATGCAAATGGCTTCGTACCAAGTCCGGATTCTAGTTCTTCCTCTCCTATCGCATTATGTCCATGTGTTAAGTTGGAGAGTTTCTTGAATTCTCTATGGAGTTTGTCTCCTAAAATAATGGTGGTAACGGAGCAAGAATCCAACCATAACGGAGGCACTCTTAATGAAAGGTTCATCGAAGCTTTGAATTTTTACGCTACGTTGTTCGATTGTTTGGAATCAACGGTTGCTAGGAATTCGGTGGAGAGGTTAAGGGTGGAGAAGATGTTATTTGGAGAGGAAATTAAGAATATTATCTCTTGTGAAGGGTTGGAGAGAAAAGTGAGGCATGAGAAATTGGAAAGGTGGGTGCAAAGGTTCGACACAACGGGATTTGGAAGAGTTCCGTTGAGTTACTTTGCATTGTTGCAAGCTAGAAGAATGATACAAGGGTTCGGATGCGAAGCTTATAAGGTGAAGGAAGAGAATGGTTGTTGCTTCATTTGTTGGCAAGATAGGCCGTTATTTTCGGTTTCGGCATGGAGGTGTAGGAGGTATGATTGAGTACATTGGTTGTGGTTTGTTCTTTTGTTTTAGGAACACTTGGGTTGATGATCCTTTTCTAGTTTGTTGTTGCCCTTTTGTCATTGTACATTGTTCTTTTGTGTCAATTTCATTTCCTTTTTAAAGGATTATGGTTCAAAATGGACCATGGTGTGATTTTTAATGCCTTATCCAATGATGTTCTGAGACTATGTATGATCTTACATGGATATAATACTTCTTGTC

Functional annotation

Database	accession number	e-value	annotation
nr	OVA10283.1	3.9e-187	Transcription factor GRAS
Swissprot	Q9LPR8.1	6.1e-161	GRAS family protein 5
trEMBL	A0A200QIE7	2.8e-187	Transcription factor GRAS

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G50420.1	59.24	4e-165	578	SCL-3;SCL3	scarecrow-like 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06576	AT1G50420.1	476	188	3	3	472	7	482	59.24	4e-165	578
AfisC6G06576	AT1G66350.1	439	225	7	39	474	143	511	32.12	2e-60	230
AfisC6G06576	AT2G01570.1	440	218	10	39	469	212	581	32.50	7e-59	224

Ortholog group

Species	Genes
Allium cepa	g128746.t1
Allium fistulosum	AfisC6G06576
Allium sativum	Asa8G00513.1
Arabidopsis thaliana	AT1G50420.1
Oryza sativa	LOC_Os01g71970.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	48	469	439.7	7e-132

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009628	P	response to abiotic stimulus
GO:0009739	P	response to gibberellin
GO:0009755	P	hormone-mediated signaling pathway
GO:0043565	F	sequence-specific DNA binding
GO:0044763	P	single-organism cellular process
GO:0048519	P	negative regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048731	P	system development
GO:0071229	P	cellular response to acid chemical
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network