result

Gene information

Detail information of AfisC6G06606


Location
GeneChrStartEndStrand
AfisC6G06606chr611509571641151000499+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_019706368.10.0e+00ISWI chromatin-remodeling complex ATPase CHR11 isoform X1
SwissprotQ7G8Y3.20.0e+00Sucrose nonfermenting protein 2 homolog
trEMBLA0A6J0PJ720.0e+00ISWI chromatin-remodeling complex ATPase CHR11 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G18620.180.580.01670CHR17chromatin remodeling factor17

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily208475237.51.5e-70
PF00271.28Helicase_CFamily49761068.84e-19
PF09110.8HANDDomain75980528.22.3e-06
PF09111.7SLIDEDomain9011011145.65.2e-43

Gene Ontology
AccessionOntologyName
GO:0007059Pchromosome segregation
GO:0000086PG2/M transition of mitotic cell cycle
GO:0000182FrDNA binding
GO:0000183Pchromatin silencing at rDNA
GO:0000793Ccondensed chromosome
GO:0036310Fannealing helicase activity
GO:0000786Cnucleosome
GO:0000790Cnuclear chromatin
GO:0001046Fcore promoter sequence-specific DNA binding
GO:0001102FRNA polymerase II activating transcription factor binding
GO:0001410Pchlamydospore formation
GO:0003697Fsingle-stranded DNA binding
GO:0006369Ptermination of RNA polymerase II transcription
GO:0007010Pcytoskeleton organization
GO:0004003FATP-dependent DNA helicase activity
GO:0005829Ccytosol
GO:0005524FATP binding
GO:0005667Ctranscription factor complex
GO:0005677Cchromatin silencing complex
GO:0005700Cpolytene chromosome
GO:0005730Cnucleolus
GO:0005987Psucrose catabolic process
GO:0006261PDNA-dependent DNA replication
GO:0006284Pbase-excision repair
GO:0006302Pdouble-strand break repair
GO:0006337Pnucleosome disassembly
GO:0006344Pmaintenance of chromatin silencing
GO:0006346Pmethylation-dependent chromatin silencing
GO:0006348Pchromatin silencing at telomere
GO:0006349Pregulation of gene expression by genetic imprinting
GO:0006352PDNA-templated transcription, initiation
GO:0006368Ptranscription elongation from RNA polymerase II promoter
GO:0019237Fcentromeric DNA binding
GO:0007126Pmeiotic nuclear division
GO:0009790Pembryo development
GO:0007420Pbrain development
GO:0007517Pmuscle organ development
GO:0008623CCHRAC
GO:0009294PDNA mediated transformation
GO:0009414Presponse to water deprivation
GO:0009651Presponse to salt stress
GO:0009826Punidimensional cell growth
GO:0010078Pmaintenance of root meristem identity
GO:0010228Pvegetative to reproductive phase transition of meristem
GO:0010231Pmaintenance of seed dormancy
GO:0010492Pmaintenance of shoot apical meristem identity
GO:0015616FDNA translocase activity
GO:0016514CSWI/SNF complex
GO:0016584Pnucleosome positioning
GO:0016586CRSC complex
GO:0016589CNURF complex
GO:0016590CACF complex
GO:0019233Psensory perception of pain
GO:0031213CRSF complex
GO:0031492Fnucleosomal DNA binding
GO:0031496Ppositive regulation of mating type switching
GO:0032197Ptransposition, RNA-mediated
GO:0034080PCENP-A containing nucleosome assembly
GO:0035041Psperm chromatin decondensation
GO:0035060Cbrahma complex
GO:0035063Pnuclear speck organization
GO:0035076Pecdysone receptor-mediated signaling pathway
GO:0035092Psperm chromatin condensation
GO:0035690Pcellular response to drug
GO:0042148Pstrand invasion
GO:0042752Pregulation of circadian rhythm
GO:0042766Pnucleosome mobilization
GO:0043596Cnuclear replication fork
GO:0044030Pregulation of DNA methylation
GO:0044109Pcellular alcohol catabolic process
GO:0045815Ppositive regulation of gene expression, epigenetic
GO:0046020Pnegative regulation of transcription from RNA polymerase II promoter by pheromones
GO:0048813Pdendrite morphogenesis
GO:0051574Ppositive regulation of histone H3-K9 methylation
GO:0060195Pnegative regulation of antisense RNA transcription
GO:0060218Phematopoietic stem cell differentiation
GO:0061412Ppositive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation
GO:0061587Ptransfer RNA gene-mediated silencing
GO:0070577Flysine-acetylated histone binding
GO:0070615Fnucleosome-dependent ATPase activity
GO:0071280Pcellular response to copper ion
GO:0090241Pnegative regulation of histone H4 acetylation
GO:0090537CCERF complex
GO:1900036Ppositive regulation of cellular response to heat
GO:1900189Ppositive regulation of cell adhesion involved in single-species biofilm formation
GO:2000177Pregulation of neural precursor cell proliferation
GO:2000219Ppositive regulation of invasive growth in response to glucose limitation

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11654SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5EC:3.6.4.- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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