result

Gene information

Detail information of AfisC6G06788

Location

Gene	Chr	Start	End	Strand
AfisC6G06788	chr6	1175244005	1175246439	+

Sequences

CDS

Protein

Gene

>AfisC6G06788
ATGTTGAGCTCTCTCTTTTCTCTCAATGAACCTAGTCCTATTCAAAACTACAACCCTACTGCATATCTAGATAACCTCTGGTCAAATATCGGCCTACACAACGAGTTAAAGTCCCAAAACTCTCAACTATCCATGGAAATCGACGATCCCAACTTAGATATAATAATATCAGATAATGGGCAGCAAAATTTCCAGAGGTCTCCACTGACTACCGATTTATCTGACTTCTTTCTTCCAAAAGATAACCATATAACCACACTATCAGAAGTTCCGAGAATGAACCAAGATGGGGACGAATTATCCACAGAAGAAGTGATGAGAATCGCAGCCGCTCACTTCATACAATTATCAACCACCAAAGACAATTTTGGGATATCTCTATCCAGTCTAAGCACGGACAAAATCAAGAACGTGGAGCTAGCGAGCTTCCTACTAGCAGCAGCCGAAAAAGTCTCGAACCATCAATATGAAAGAGCAAGCAACCTCCTTAAGCAATGCTACAGCCTTTCCTCTGTTTCAGGGAATCCAGTTCAGCGTGTAGTGTACTACTTCTGCGACGCCCTTCAAGAAAGGATCGATCGAGAAACGGGTAAGCCGTCTTTGAAATCTTACAATGAACGTAGCTCGATGACGCCGGAGAAAGTGATAAAGGCGATGCTAAGAAGCCACCCGCTTCAGCTGATATGCCATAAGACTCTTCCATTTGCGCAAGTCATGCAGTTTACGTCGATTCAAGCGATCATTGACAATGTGGCAAATGCTAAAAGGATTCATGTGATCGACCTCTCCATCCGGCATGGGCTTGAATGGACTATCTTAATGCAAGCACTCGTAAGTAGAACTTTGCATGTGGAAAGTTTTAAGCTTAGCGCGATCACCATGGCAGAAGAATTGGTGGCAGCGACCGGGGAAAGGTTTGTTGATCGAAAACCATACCAAACTCTATCAAATAGTGTCGTATTATAGTTAAGTGTTTTTAACATGATCATATACTCATGTGTTTAGAATTGAACGAATTCTTATGATGAATGAGAAAATGGATTTTCATTTAATTCTATCAGGAGCATGTCTGGGTATTGTTTGTTATTTGTCAAAATCACTTACAAGGTAACTTATTCGAATTGCAATGTTTGAAAACTTCTTGCAAGAAGCTTACAAAAGTGACTTAGAATTAGAAACTTGAAGAACGATTATTCTGTTGTTTACAACTTACACAATTTGCAATGGCACTTGTTTTTAACTTAACATATCAACTATTTTGAGTTATTAGTAGATCTTTTTGGTTCGAATTCTGAATCGTGTAAAATATCCATTACTTGTATATGTTTTGAGTTAGTCTGATTGAAAAATTACTATAAATAGTTTTACAGTTTAACAAGTTTCATGTCCGTAGACATATGTAATAATGTAATTTGTTATTTTTCTTCTTCATCATCATCATCTTAACTGCCTGAAAACCAAGCTTTTCTAGTAAACTCTAGAATTTGTTATATATTCATTACTTGTAGATCATGATAGTCAAGCTTTAAAATTAACTTATTCTACCTAAAACGTCAAATTACATTCAAATAGTTTTTTCATAGAATTTAATTTTCAAACCTTCTTGTAAATTGCTTTTCAATTTTTTATTTTTTATTTTTTATTTTTCAAGTAGCTGCATTCAAAATAAGTTGTTGACAACTGGACTAGTTTTAATGCACATATTTGCTAGATAAGTATAAGTTTATGTGATTTTATTTTGTTTTTCAAAAAGTGAAGGTAAACTGAGATATCATGTCTTCCTAAAATTTACCAGGTTAAAAAGCTTTGCCGAGGGACTAGGGTTACCATTCGAGTTCAAGACGGTGATAGTGCCGGACATGAAGGAACTGAAGGAGGAGATGTTCGAGGTGAAGGAAGGAGAAAGGGTAGCCCTGTACTCGGCCATGGACATGAACAGCATGATAGTGAAACCCGAAACCCTAGAAAACGTAATGAGAGTGATATGGAAGATCAAACCTCACGTGATGACGGTAATAGACTGCGAAGCGAAGCACAACTCGCCTTCCTTCGTGAACAGGTTCACGGAAGCGTTGTTCTACTTCAGCGCGATGTTCGACTGCATAGACGGGGCCATGGGTAAAAGGGACGAGAACAGGTACGCTTTGGAGAAGGATTTCATGGCGCAGGGGATAAAGAGCATAGTGGCCATGGAAGGAAGGGAGAGGGTGGTAAGGCATGTGGGGATAGGGGTCTGGAGGGAGTTCTTTAAGAGGTTTGGGATGGTGGAGGTGGAGCTGAATGAGTATTCGTTGTATCAGGGGAGTCTTATTTTGAAGCAGTTTGTTAATGGCAGCTTCTGTACAGTTGAGATGGACGGCAAGTCTTTGTTGGTTGGGTGGAAGGGGACCCCCATTCACTTTGTGTCTGCTTGGAAGTTTCAGGGTAGGGAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008813391.1	1.2e-138	DELLA protein RGL1-like
Swissprot	Q8S4W7.1	2.3e-49	VvGAI1
trEMBL	A0A8B7D575	9.0e-139	DELLA protein RGL1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66350.1	29.59	2e-53	207	RGL;RGL1	RGA-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06788	AT1G66350.1	436	262	7	79	513	116	507	29.59	2e-53	207
AfisC6G06788	AT2G01570.1	383	242	5	137	513	218	582	30.55	5e-51	199
AfisC6G06788	AT3G03450.1	385	247	5	137	513	177	546	29.87	7e-51	198

Ortholog group

Species	Genes
Allium cepa	g260536.t1
Allium fistulosum	AfisC6G06788
Allium sativum	Asa8G00800.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	142	512	299.7	2.5e-89

Gene Ontology

Accession	Ontology	Name
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0031323	P	regulation of cellular metabolic process
GO:0044702	P	single organism reproductive process
GO:0048519	P	negative regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048731	P	system development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network