result

Gene information

Detail information of AfisC6G06810

Location

Gene	Chr	Start	End	Strand
AfisC6G06810	chr6	1179287083	1179289099	-

Sequences

CDS

Protein

Gene

>AfisC6G06810
ATGAATTCCACTAAGTGTGCTTCATGTAGATTTCTACGAAGAAGATGCAGTGAAGATTGTATTCTAGCTCCTTGCTTCCCTACATCAGATCCTGAAAGATTTCACTCTGTTCATGAAATATTTGGAGCTAGTAATGTCAGTAGAATGCTTCAGGTAAATCTACTATGCAAATTTCACATATCTAGAGCCTTACTTTTTTTTATCTTTTCTCAATATAACCGTGCATATTTGTAACTATGTTTAGCATATTTATTCTATTTATAAATTTTATTATTGTTTAATTTTTCATATTCTACCTATATCTCTAGCTACCTATATTAAAAATACAATTTTCTTTTGTTGAATACGTAAAATCTATGCAAATAATGTCAGTAGAATGCTGTAGGTAAATGTATGTCAAATTATATTTCATATACTTCAGATATCCATAGCCGTATTATTTTATCGTATCTCAACATAATTATGCATGCTTGCAACTAATGTTTTGTGTATTAATTCTACTTCAAATTCTCTATGTTTCTAAAATTCAAAGTCACTCTATTTACATATTTTATTGTTGTTTATTTAGTATATGGCTATATCTCTATGTATGGTACAAATATAATCAGTGGTAAAAAAATGAATTAAACACTTGGGAATTGAGTCTTTAAACGAACAATTCAGTGGCTAGATAAATTTTAAAGACCAGTTGCACATTAAATTTGTAGTATTTAACTCTCTTGTTACTAAAATAATTTTGATACATTTTACGGAACGACTATACCTCATTTTGGCAACGCCTCTCCTCTTTGATTTCCACAGCACTTCTCATTTAAATAATAGCATGAATTGACAGGAGAGAAAAAATTAATTAATTAAATGAAACATGTAATAGAAATTAGGGGATTTAACGTGTTGCCAAAATAAGGCGTAGTCGATTCTTGCATATATATATATATATATATATGTATATATGTATGTACATGTACATGTACATGTATATGTATATGTATATTTATATGTATATGTATGTGTGTATATAATGTATGTGTGTGTGTGTGTATATATATTAACAGCAACTAACATTTGAGTATAACATATTAATAAATTCACAGTAATTTTGTACTAAAAAGTACATTATCGATAATAAATGATGTATATTTTCACGAAAGAATCATTACAATGACAATATAGCAACTTTTGAACATCACAATTAATCGTACAGAGACGATAATAGTGAGAATACTTATGATGTCATTTTTAATTAAACTGTGGCATTTATGATTCTACACTGACTAATGACACTTTACTGCTTCCTCGATCTATTTCCATTTATCTCTTAATCCAAAGCAACAAAAAATTGCATGCCATTAGCATAAAATAATTAAATCTAGTTGAAAGTAAAAAGTAGTAAAAATTGCCATGAACATTCGCATTGTAGATCTCTATTGCTCAATTCTTTTGTTGTTGCAAATAATTAGGATATAAATAAATTAGAACTCGACATATAGCTCATAGAAATAATCGTATTTTTTGATGAGAAAGATAGATAGATTTAAATGATGTGATAAATCATGGTGTTTCTTATCATCTACGAGATGAGAAATATGGATTTTATGAGCGAAGGAAGATGAGAGTCTACAAGAATGCGTGCACGAGAAAGATAAAAGCAGTATGTTTGTAGTAAAAAAAATTTGTTGAATAAACACCTTAACATCAGTTTGATGTTATGCAGCAAATTCCCACGAAAAAACATAGGGATGCAGTAGAAAGCATTGCGATAGAGACAGCGTACCGAGTCAGAACTACAGTTTATGGTATTTCACCTGAGATCCATTCACTTCTGCAGCAGATTGATGCAGTTCAATGTGAGATTGCTTCAACAAAAGCTCAAATTATTATGCTTATTATTCGTGATTTGAGTCCAAATGAACAAGAATTTCAGTATGATCAACTTCAGAATGAAGATGATGGTGCTCAATATTTAGAACTTGGCCAAAGTAGCAACCAGATTAATATTAATCCACCTTCCAAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_012829903.1	1.7e-24	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9.1	2.2e-24	ASYMMETRIC LEAVES 2-like protein 6
trEMBL	A0A022S1U0	1.3e-24	LOB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G30130.1	43.65	2e-26	114	ASL5;LBD12;PCK1	Lateral organ boundaries (LOB) domain family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06810	AT2G30130.1	126	68	1	2	124	5	130	43.65	2e-26	114
AfisC6G06810	AT3G26660.1	105	53	0	1	105	1	105	49.52	3e-26	114
AfisC6G06810	AT3G26620.1	105	53	0	1	105	1	105	49.52	4e-26	113

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	5	102	108.9	1.1e-31

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016020	C	membrane
GO:0005654	C	nucleoplasm
GO:0009536	C	plastid
GO:0009799	P	specification of symmetry
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0009965	P	leaf morphogenesis
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010311	P	lateral root formation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048441	P	petal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network