result

Gene information

Detail information of AfisC6G06860

Location

Gene	Chr	Start	End	Strand
AfisC6G06860	chr6	1187121895	1187123321	-

Sequences

CDS

Protein

Gene

>AfisC6G06860
ATGTATCAGCATCAGTTTATTGATCCTTCACAGACTAGTATTAATTACCTGGACTTATCACTGATGGGAAGCAGTGGTACAAGCAACAACAACAGTAGCTGCTTTGAAGCTGATCCTTCTTCTCTTTTCAGGATGTTGCAACCGAGTATTAATTTCAACGACGTCGGTAGTTATCTGAATGAAAACATGTCCATTAGCGGAACTGTTTCCCCGACTTCAGCTGCAGTGTATTATGATCCTAATGCTGGCTTTAATTACTCATTAATCCCTAATAATGGGATTGACATCAATGGTCATGAGCCCTTGTTAGAATTTAAAGGAGAAGGTATTGATACATATGGTGGAGAGGTGAATGAAAATATTATGGTTAAATCAGGAGGTAAAAAGAGAAAAAATAGTGGAAAAGGAGGTGTCAAAAATGAGAAGGACAGGAGGTTAAGGTTGAGCAAGCAGTATGAAGTTCTTAAAACAGTAATCCCAAATCCTACAAAGGTAATATTAGTTACTTATCTTCATTGTTATTCAAATTACATGAATTACTAAATGAGTGTATATACATTTTCATTGTACCTGAAGCCTGATAGAGCGACCATAGTACAAGACACGATTGACCACATCCACGAACTTCTGCGCACGACGGATGAACTGAAGCTTCTGATAGAGCAAAAACGTGTGAGAAAAATAAGCATGAATAGGCCAGAAACGATTAACGACACCTCAGGGGACAATGAGAGCTCATGCATGAAGCCAGTTCATGCATTGAAAGGCTCTTTGAGGAGTTCATGGCTGCAAAGGAAGTCTAAGTACACCCATGTTGATGTTCGCATTGTGGAAGATGAGGTGTTCATCAAGCTGAGACAGCATAAGAAGATCGACTGCTTGATGATTATTGCTCGAGTTTTTGATGAGTTGGTGCTTGATCTCGTTCATATGTCTGGTGGAAATATTGGTGATCTTCATGTCTTCATGTTTAATACCAAGGTATTTAACTGGTTTCTCCATATGGAGATACTTCTGGTAATATCACTGTGGATATTCATCTGATAAATTTAGCGATTAAAACATAACTTTATACTGGAGAATTCTTTTTACACATAAGTGTAACTTTTATATGTTTGTAAACTAGAGTTGGGTCATATAAATAATTAAAGACAGACTAATGTGTGGATTCTAGCTAGTTTATGTTATAATCCAAGTAGACTTGCAAGTTACAATGTGCTCAACATTACGTTTGTGAAATGCAGATACAAGAAGGGTCTTCAGTGTATGCAGGCGCAATAGCAAAGAAGATAATTGAAGCAATGGATGCTAGCTATCCAGAACTGTTTGTTAGTTTCTAGCTTGGAAATTTTGGGAGTTTCTTGAAACTAGTAATAGTGAATAATAAGCAATAACTAGGGTAAAGAAGAATAAATTGTGTTGAGTTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274493.1	6.4e-64	transcription factor EAT1-like
Swissprot	Q9LND0.1	1.0e-45	bHLH transcription factor bHLH089
trEMBL	A0A7M3UQL5	1.7e-82	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G06170.1	41.70	3e-50	196		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06860	AT1G06170.2	271	145	6	62	325	142	406	41.70	3e-50	196
AfisC6G06860	AT1G06170.1	271	145	6	62	325	142	406	41.70	3e-50	196
AfisC6G06860	AT2G31210.1	314	117	10	63	323	128	419	38.85	3e-45	179

Ortholog group

Species	Genes
Allium cepa	g539402.t1
Allium fistulosum	AfisC6G06860
Allium sativum	Asa0G04216.1; Asa0G04217.1; Asa8G00149.1; Asa8G00850.1
Arabidopsis thaliana	AT1G06170.1; AT1G06170.2; AT2G31210.1; AT2G31220.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	139	181	27.1	2.7e-06

Gene Ontology

Accession	Ontology	Name
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009555	P	pollen development
GO:0048658	P	anther wall tapetum development
GO:0052543	P	callose deposition in cell wall

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network